Factsheet for Zm00001d044510_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32714	Sorghum	nucleus	92.89	94.18
Zm00001d011155_P012	Maize	nucleus	88.15	90.29
Os01t0549400-01	Rice	nucleus	80.67	81.69
TraesCS3D01G202500.3	Wheat	nucleus	77.43	76.76
TraesCS3A01G194200.1	Wheat	nucleus	74.56	76.37
TraesCS3B01G230800.1	Wheat	nucleus	74.44	76.05
Bra001004.1-P	Field mustard	cytosol	49.5	62.42
Solyc12g035130.1.1	Tomato	nucleus	47.51	62.25
PGSC0003DMT400080614	Potato	nucleus	47.51	62.15
Bra040699.1-P	Field mustard	cytosol	47.13	62.07
AT3G01540.2	Thale cress	cytosol	47.76	61.87
CDX91943	Canola	cytosol	48.63	58.65
Bra023478.1-P	Field mustard	cytosol	49.38	58.58
GSMUA_Achr8P31890_001	Banana	nucleus	56.86	58.02
CDX91036	Canola	cytosol	49.13	57.6
Solyc02g086660.2.1	Tomato	nucleus	50.12	56.94
CDY28671	Canola	cytosol	47.01	56.86
CDX74304	Canola	cytosol	48.75	56.83
PGSC0003DMT400001391	Potato	cytosol	51.25	56.3
Zm00001d039673_P002	Maize	cytosol	48.75	55.78
Zm00001d008725_P003	Maize	cytosol	48.01	55.56
KRH56577	Soybean	nucleus	53.37	55.23
KRG93254	Soybean	endoplasmic reticulum	53.24	55.03
AT5G14610.1	Thale cress	cytosol	48.75	54.92
CDX85591	Canola	cytosol	49.25	52.53
VIT_14s0066g01020.t01	Wine grape	cytosol	54.61	50.75
Zm00001d039452_P002	Maize	cytosol	30.8	44.67
Zm00001d042416_P002	Maize	extracellular, plasma membrane	30.3	38.09
Zm00001d019449_P004	Maize	nucleus	22.32	35.24
Zm00001d036897_P001	Maize	extracellular	26.18	34.2
Zm00001d048924_P001	Maize	plasma membrane	24.69	32.57
Zm00001d007755_P001	Maize	plastid	26.06	32.3
Zm00001d007757_P004	Maize	plastid	25.69	31.12
Zm00001d048632_P001	Maize	cytosol	50.12	29.09
Zm00001d007719_P010	Maize	cytosol	48.38	28.68
Zm00001d047502_P001	Maize	extracellular	20.82	27.02
Zm00001d033704_P007	Maize	extracellular	23.57	25.61
Zm00001d013453_P001	Maize	nucleus	23.19	25.34
Zm00001d047633_P002	Maize	nucleus	23.69	24.74
Zm00001d028898_P011	Maize	cytosol	22.94	23.9
Zm00001d024533_P001	Maize	nucleus	23.57	17.75

Protein Annotations

EntrezGene:100383248	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6NMP6	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM41461.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI00018C6B31
InterPro:WW_dom	InterPro:WW_dom_sf	EnsemblPlantsGene:Zm00001d044510	EnsemblPlants:Zm00001d044510_P002	EnsemblPlants:Zm00001d044510_T002	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 14

Coordinates

chr3:+:230393088..230398541

Molecular Weight (calculated)

88957.7 Da

IEP (calculated)

10.395

GRAVY (calculated)

-1.015

Length

802 amino acids

Sequence
(BLAST)

001: MSGGTGSSGR AAPRYAPDDP TLPKPWRGLV DGTTGYLYYW NPETNVTQYE RPVPPESQLL PPPPPLPPPP PRSRDRRDRS RSRSRTPPRR DHRDRDRDRD
101: RRHDEHASSK TASSHHHPAP VAVADDPSTE AYRRRHEITV TGDNVPTPIT SFEAGGFPSE ILKEIQRAGF ASPTPIQAQS WPIAMQNQDV VAIAKTGSGK
201: TLGYLLPGFM HIKRLQNSTR NGPTVLVLAP TRELATQILD EAVKFGRSSR ISCTCLYGGA PKGPQLRDLD RGVDVVVATP GRLNDILEMR KVSLKQVSYL
301: VLDEADRMLD MGFEPQIRKI VKEIPHRRQT LMYTATWPKE VRRIADDLLV HPVQVTIGSV DSLVANSSIT QHVEIITPSE KQRRLEQILR SQDSGSKILI
401: FCTTKRMCDQ LARTLTRQFG ASAIHGDKSQ SEREKVLNQF RSGRSPILVA TDVAARGLDI KDIRVVINYD FPTGVEDYVH RIGRTGRAGA TGVAYTFFCD
501: QDSKYAADLI KILEGANQRV PRDLEDMASR GGGRGRKRNH WASRPDRGGS RSELDSRYSS RDGLASSGKS ESGRGSRGRD DNGSRGRYDP GETDGRSRRS
601: TRGRSRSRSK SDSRSRSPSP KKSRRHEGRR SRTKSRSRSR SRRNHGASHS KSRSPVASRR YEKTASGSAR PNSGHAEHKS PPRSHSRDDH VNHSDHKDDH
701: KDDHMEDGKM ERVDLDRSPS PHDDKSAPYS PVYNGKASGS MSPNGQPEAG AKFVEPSGKP EPASPVRCSK GRDDDEEGII DEDGEIGEDD PRANAAVQNG
801: NN

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.