Factsheet for GSMUA_Achr8P31890_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080614	Potato	nucleus	50.0	64.11
Solyc12g035130.1.1	Tomato	nucleus	49.87	64.05
Bra001004.1-P	Field mustard	cytosol	50.51	62.42
AT3G01540.2	Thale cress	cytosol	49.11	62.36
Bra040699.1-P	Field mustard	cytosol	47.96	61.9
Solyc02g086660.2.1	Tomato	nucleus	52.93	58.92
PGSC0003DMT400001391	Potato	cytosol	54.33	58.49
CDX91943	Canola	cytosol	49.36	58.35
KRH56577	Soybean	nucleus	57.25	58.06
Bra023478.1-P	Field mustard	cytosol	49.75	57.84
KRG93254	Soybean	endoplasmic reticulum	57.0	57.73
KXG32714	Sorghum	nucleus	57.89	57.52
CDX91036	Canola	cytosol	49.75	57.16
CDY28671	Canola	cytosol	48.09	57.01
Zm00001d044510_P002	Maize	mitochondrion	58.02	56.86
Os01t0549400-01	Rice	nucleus	57.12	56.69
CDX74304	Canola	cytosol	49.49	56.54
Zm00001d011155_P012	Maize	nucleus	55.73	55.94
AT5G14610.1	Thale cress	cytosol	50.51	55.76
VIT_14s0066g01020.t01	Wine grape	cytosol	59.8	54.46
TraesCS3D01G202500.3	Wheat	nucleus	54.58	53.03
TraesCS3A01G194200.1	Wheat	nucleus	52.8	53.0
GSMUA_Achr8P01340_001	Banana	cytosol	25.7	52.74
TraesCS3B01G230800.1	Wheat	nucleus	52.54	52.61
CDX85591	Canola	cytosol	49.62	51.86
GSMUA_Achr10P...	Banana	cytosol	30.53	48.29
GSMUA_Achr1P15980_001	Banana	cytosol	51.53	38.35
GSMUA_Achr9P25390_001	Banana	mitochondrion	19.08	33.48
GSMUA_Achr8P15350_001	Banana	plastid	24.68	32.72
GSMUA_Achr6P29700_001	Banana	plastid	24.05	32.7
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	25.06	32.51
GSMUA_Achr11P...	Banana	nucleus	23.03	31.37
GSMUA_Achr2P09160_001	Banana	cytosol	19.47	27.97
GSMUA_Achr4P17320_001	Banana	plastid	17.68	27.25
GSMUA_Achr1P13820_001	Banana	mitochondrion	18.7	27.12
GSMUA_Achr1P13000_001	Banana	cytosol	23.54	26.66
GSMUA_Achr3P01410_001	Banana	nucleus	17.81	26.57
GSMUA_Achr5P06030_001	Banana	nucleus	24.3	26.56
GSMUA_Achr1P24870_001	Banana	cytosol	21.76	25.79
GSMUA_Achr10P...	Banana	cytosol	19.34	15.18

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G31890_001	EnsemblPlants:GSMUA_Achr8P31890_001	EnsemblPlants:GSMUA_Achr8T31890_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TVE1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540
UniParc:UPI000295BCFF	InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:

Description

ATP-dependent RNA helicase-like protein DB10 [Source:GMGC_GENE;Acc:GSMUA_Achr8G31890_001]

Coordinates

chr8:+:33412886..33427187

Molecular Weight (calculated)

86621.9 Da

IEP (calculated)

10.116

GRAVY (calculated)

-0.776

Length

786 amino acids

Sequence
(BLAST)

001: MAGGGSASSR PRYAPEDPTL PKPWRALVDG STGYLYYWNP ETNVTQYERP ADELPPPPPL LPPPPPSPPS QGRLRGKSSS MHDHGHDTKD SREPRATSTR
101: GHASSADGGA SASAEAYRRQ NEIIVTGDDV PAPFMTFEST GFPAEILKEV YHAGFSHPTP IQAQSWPIAL QNRDIVAIAK TGSGKTLGYL IPGFIHLKRL
201: RNNSKLGPTM LILAPTRELA TQIQDEAVKF GRSSKILCTC LYGGAPKGPQ LRDLDRGVDV VVATPGRLND ILEMKRVSLR QVSYLVLDEA DRMLDMGFEP
301: QIRKIVKEVP HRRQTLMFTA TWPKEVRKIA ADLLVHPVQV NIGSTDELVA NSAITQYVEV ITPLEKQRRL EQILRSQDPG SKVIIFCSTK RMCDQLARTL
401: TRQFSASAIH GDKSQAERDR VLSQFRTGRS PILVATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGLSY TFFCDQDSKY AADLVKVLEG
501: ANQRVPKELR DMVSRGGFGG RSRRWGSRSD ARDGGRTQSG RINSSYNGKG GQGLLPLPVR SDIQHGSRGI IDHEPHDRSK GRGRSPTRSR SRSRSRSHGR
601: RYSPISKRVP ARHASPHSRN HGRSRSRSHS HSPSRGFDRH GVGTGQASRV GSSPARRVQS PVVHGSNDPD RSPMQYYEDQ QRPQSYDGEH GRKAELDHSP
701: SPHDEISRSP HSIIDNGRSQ GSPGQGPWPA GSSPRNGDTE QPIPRSPPLQ NNKCGGEEEE GMIPADEEDG VIPLEEDTIV LQRYKP

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.