Factsheet for Bra040699.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28671	Canola	cytosol	99.18	91.1
Bra001004.1-P	Field mustard	cytosol	89.98	86.16
AT3G01540.2	Thale cress	cytosol	87.19	85.78
Bra023478.1-P	Field mustard	cytosol	78.0	70.27
PGSC0003DMT400080614	Potato	nucleus	64.53	64.11
Solyc12g035130.1.1	Tomato	nucleus	64.37	64.05
Solyc02g086660.2.1	Tomato	nucleus	68.8	59.35
PGSC0003DMT400001391	Potato	cytosol	69.13	57.67
TraesCS3A01G130200.4	Wheat	cytosol	60.76	56.92
TraesCS3B01G149300.8	Wheat	cytosol	60.59	56.77
TraesCS3D01G131100.11	Wheat	cytosol	60.76	56.66
KRH56577	Soybean	nucleus	70.61	55.48
Zm00001d008725_P003	Maize	cytosol	63.05	55.41
KRG93254	Soybean	endoplasmic reticulum	69.95	54.9
Zm00001d039673_P002	Maize	cytosol	62.07	53.92
OQU86230	Sorghum	cytosol	62.4	53.15
HORVU3Hr1G024610.13	Barley	cytosol, plastid	61.08	52.62
Os01t0172200-01	Rice	cytosol	61.74	49.54
VIT_14s0066g01020.t01	Wine grape	cytosol	69.95	49.36
KXG32714	Sorghum	nucleus	63.38	48.8
Zm00001d011155_P012	Maize	nucleus	62.56	48.66
GSMUA_Achr8P31890_001	Banana	nucleus	61.9	47.96
Os01t0549400-01	Rice	nucleus	61.41	47.22
Zm00001d044510_P002	Maize	mitochondrion	62.07	47.13
Bra030884.1-P	Field mustard	nucleus	37.6	45.89
TraesCS3D01G202500.3	Wheat	nucleus	60.59	45.61
TraesCS3A01G194200.1	Wheat	nucleus	58.13	45.21
TraesCS3B01G230800.1	Wheat	nucleus	57.8	44.84
Bra035857.1-P	Field mustard	cytosol	39.08	40.27
Bra001200.1-P	Field mustard	cytosol	61.41	35.55
Bra035518.1-P	Field mustard	nucleus	29.56	33.58
Bra023227.1-P	Field mustard	nucleus	29.72	33.33
Bra016869.1-P	Field mustard	cytosol, plastid	32.68	32.68
Bra007399.1-P	Field mustard	cytosol	32.35	32.24
Bra003341.1-P	Field mustard	cytosol	32.02	31.97
Bra003343.1-P	Field mustard	cytosol	32.68	30.95
Bra007402.1-P	Field mustard	cytosol	32.18	30.53
Bra035177.1-P	Field mustard	cytosol	26.93	27.89
Bra018133.1-P	Field mustard	cytosol	26.93	27.89
Bra008471.1-P	Field mustard	cytosol	25.78	27.89
Bra003568.1-P	Field mustard	cytosol	26.93	27.75
Bra014568.1-P	Field mustard	cytosol	28.74	26.28
Bra021872.1-P	Field mustard	nucleus	27.91	25.8
Bra000447.1-P	Field mustard	cytosol	28.24	25.56
Bra004464.1-P	Field mustard	cytosol	29.89	24.86
Bra029779.1-P	Field mustard	nucleus	28.74	19.73
Bra025856.1-P	Field mustard	nucleus	29.89	15.54

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra040699	EnsemblPlants:Bra040699.1	EnsemblPlants:Bra040699.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4FHX0	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540
UniParc:UPI000253E772	InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:

Description

AT3G01540 (E=2e-242) DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase

Coordinates

chrScaffold000237:-:3888..6976

Molecular Weight (calculated)

66570.4 Da

IEP (calculated)

10.225

GRAVY (calculated)

-0.486

Length

609 amino acids

Sequence
(BLAST)

001: MAATASAVRY APEDHSLPKP WKGLVDDLTG YLYFWNPETN VTQYERPATS SHPPKLLSVS SSVQVLVQHH TSSIPSYVPA AKDDVLYRNG YGNGGPKVAR
101: NGAANGLGNS SPPPPPSSAL ANDISPDAYC RRHEITVSGG QVPPPLMSFE TTGFPPELLR EVLGAGFSAP TPIQAQSWPI AMQGRDIVAI AKTGSGKTLG
201: YLIPAFMHLQ RIRNDSRMGP TILVLSPTRE LATQIQDEAV KFGRSSRISC TCLYGGAPKG PQLRDLERGA DIVVATPGRL NDILEMRRIS LRQVSYLVLD
301: EADRMLDMGF EPQIRKIVKE IPTKRQTLMY TATWPKGVRK IAADLLVNPA QVNIGNVDEL VANKSITQHI EVVATMEKQR RLEQILRSQE PGSKVIIFCS
401: TKRMCDQLTR NITRQFGAAA IHGDKSQPER DSVLNQFRSG RTPVLVATDV AARGLDVKDI RAVINYDFPN GVEDYVHRIG RTGRAGATGQ AFTFFGDQDS
501: KHASDLIKIL EGADQKVPPQ IREMAARGGG MNKFSRWGPP SGGRGRDSGY GGRGSSFGSR DSGMGSRSSN GWGRERERSR SPERFNRVPP PSSNGSPPRS
601: FHEAMLKHR

Best Arabidopsis Sequence Match ( AT3G01540.4 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.