Factsheet for Bra016869.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47978	Canola	plastid	68.47	99.76
CDY14843	Canola	cytosol, plastid	96.22	95.75
AT2G42520.2	Thale cress	nucleus, plastid	93.1	89.57
Bra007399.1-P	Field mustard	cytosol	84.24	83.96
Bra003341.1-P	Field mustard	cytosol	82.59	82.46
Bra003343.1-P	Field mustard	cytosol	79.8	75.58
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	77.18	75.56
Bra007402.1-P	Field mustard	cytosol	78.82	74.77
Solyc03g052980.2.1	Tomato	nucleus	74.88	74.51
PGSC0003DMT400002828	Potato	cytosol	75.04	73.95
KRH38030	Soybean	endoplasmic reticulum	73.4	73.16
KRH71800	Soybean	plastid	72.91	72.67
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.79	70.72
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.62	70.55
TraesCS4D01G148700.1	Wheat	golgi	69.62	70.55
Os11t0599500-00	Rice	nucleus, plasma membrane	71.1	69.5
Zm00001d048924_P001	Maize	plasma membrane	68.64	68.75
KXG28851	Sorghum	cytosol, plastid	69.46	67.68
TraesCS4A01G141400.1	Wheat	plastid	69.29	64.33
Bra014568.1-P	Field mustard	cytosol	60.92	55.71
Bra030884.1-P	Field mustard	nucleus	28.9	35.27
Bra035857.1-P	Field mustard	cytosol	33.66	34.69
Bra035518.1-P	Field mustard	nucleus	29.56	33.58
Bra001004.1-P	Field mustard	cytosol	34.48	33.02
Bra023227.1-P	Field mustard	nucleus	29.39	32.97
Bra040699.1-P	Field mustard	cytosol	32.68	32.68
Bra023478.1-P	Field mustard	cytosol	33.99	30.62
Bra000447.1-P	Field mustard	cytosol	32.84	29.72
Bra008471.1-P	Field mustard	cytosol	27.09	29.31
Bra035177.1-P	Field mustard	cytosol	28.24	29.25
Bra018133.1-P	Field mustard	cytosol	28.24	29.25
Bra003568.1-P	Field mustard	cytosol	28.08	28.93
Bra021872.1-P	Field mustard	nucleus	30.38	28.07
Bra004464.1-P	Field mustard	cytosol	33.66	28.01
Bra029779.1-P	Field mustard	nucleus	30.71	21.08
Bra001200.1-P	Field mustard	cytosol	33.33	19.3
Bra025856.1-P	Field mustard	nucleus	32.51	16.91

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra016869	EnsemblPlants:Bra016869.1	EnsemblPlants:Bra016869.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DK41	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002543AAB	SEG:seg

Description

AT2G42520 (E=2e-270) | DEAD box RNA helicase, putative

Coordinates

chrA04:+:17814059..17816387

Molecular Weight (calculated)

65866.4 Da

IEP (calculated)

7.997

GRAVY (calculated)

-0.489

Length

609 amino acids

Sequence
(BLAST)

001: MSASWADVAD SENNTASGST SQKPQQPSRP AYVPPHLRNK QPSSSDPVAA PSPANDRVGY NGPPSASRWA PSGGSGGYRA DAGRPRGTGG GWNNRSGGWD
101: RREREVNPFE NADAEPEPAF TEQDNTGINF DAYEDIPIET SGDNVPPAVN TFAEIDLGEA LNLNIRRCKY VKPTPVQRHA IPILLAGRDL MACAQTGSGK
201: TAAFCFPIIS GIMKDQHVVQ RPRGSRTVYP LAVILSPTRE LASQIHDEAK KFSYQTGVKV VVAYGGTPIN QQLRELERGV DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TLLFSATFPR EIQRLAADFL ANYIFLAVGR VGSSTDLIVQ RVEFVLDSDK RSHLMDLLHA
401: QRENGMQSLT LVFVETKRGA DSLENWLCIN GFPATSIHGD RSQQEREVAL KSFKSGRTPI LVATDVAARG LDIPHVAHVV NFDLPNDIDD YVHRIGRTGR
501: AGKSGLATAF FNDGNTSMAR SLSELMQEAN QEVPAWLSRY ASRSSFGGGK NKRSGGRFGG RDFRREGSYI RGGGGGGGGY YGGGGGGGYG GGYGAPSGGY
601: GGETPSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.