Factsheet for Bra001200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74101	Canola	cytosol	82.41	98.97
CDY08048	Canola	nucleus	81.84	97.84
AT3G06480.1	Thale cress	cytosol	86.41	83.55
Bra040699.1-P	Field mustard	cytosol	35.55	61.41
Bra001004.1-P	Field mustard	cytosol	36.31	60.06
Bra023478.1-P	Field mustard	cytosol	36.88	57.4
VIT_05s0020g00470.t01	Wine grape	cytosol	55.99	51.08
KRH36905	Soybean	nucleus	54.37	49.1
KRH11875	Soybean	endoplasmic reticulum	54.66	47.88
Bra030884.1-P	Field mustard	nucleus	22.05	46.49
Solyc01g057760.2.1	Tomato	nucleus	53.61	46.19
GSMUA_Achr1P15980_001	Banana	cytosol	46.2	46.02
Bra035857.1-P	Field mustard	cytosol	23.86	42.47
TraesCS3D01G100900.1	Wheat	cytosol	49.71	39.5
TraesCS3A01G100200.1	Wheat	cytosol	49.9	39.36
TraesCS3B01G117000.1	Wheat	cytosol	49.14	38.38
Zm00001d007719_P010	Maize	cytosol	49.33	38.36
OQU84042	Sorghum	cytosol	50.38	38.18
Zm00001d048632_P001	Maize	cytosol	49.9	37.99
HORVU3Hr1G018170.3	Barley	cytosol	49.33	37.55
Bra035518.1-P	Field mustard	nucleus	17.97	35.26
Bra023227.1-P	Field mustard	nucleus	17.87	34.62
Bra007399.1-P	Field mustard	cytosol	19.58	33.72
Bra003341.1-P	Field mustard	cytosol	19.39	33.44
Bra016869.1-P	Field mustard	cytosol, plastid	19.3	33.33
Bra007402.1-P	Field mustard	cytosol	19.96	32.71
Bra003343.1-P	Field mustard	cytosol	19.49	31.88
Bra008471.1-P	Field mustard	cytosol	15.49	28.95
Bra035177.1-P	Field mustard	cytosol	16.16	28.91
Bra018133.1-P	Field mustard	cytosol	16.16	28.91
Bra003568.1-P	Field mustard	cytosol	15.87	28.26
Bra000447.1-P	Field mustard	cytosol	17.21	26.89
Bra014568.1-P	Field mustard	cytosol	17.02	26.88
Bra021872.1-P	Field mustard	nucleus	16.35	26.1
Bra004464.1-P	Field mustard	cytosol	18.06	25.96
Bra029779.1-P	Field mustard	nucleus	17.49	20.74
Bra025856.1-P	Field mustard	nucleus	18.63	16.74

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra001200	EnsemblPlants:Bra001200.1	EnsemblPlants:Bra001200.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M4CAH1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039
ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490
SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI00025403EA	InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg

Description

AT3G06480 (E=0.0) | DEAD box RNA helicase, putative

Coordinates

chrA03:-:15269885..15273733

Molecular Weight (calculated)

115562.0 Da

IEP (calculated)

10.412

GRAVY (calculated)

-0.854

Length

1052 amino acids

Sequence
(BLAST)

0001: MATAEAAPAS AGPRYAPEDP TLPKPWKGLI DGSSGVLYYW NPETNVTQYE RPSPPLPAGA PPKLAQIPVP SAGQQGHQAQ LELGKPVGHV PQQHGLQQQP
0101: QQFPSQHGRP QMMQQQQHPG QQMPQQSGQQ FSQPQGQSMA PQPHGHPSQQ TYQPTPQQQQ QQQAMQNQHS QMPQQLSHQY PHSQQQYMGY RPYMQQQGTQ
0201: SSHQTPPQMG PQGQQFPSQQ EYNSMPPKRE GEEFHRGEKT GFSQPHLQNS EASPSQNTAF EAKASSQRPN ATQQYSGPQG NFQHPAAVTQ FQQPGANLAH
0301: QQLGPRPPHH MDQMLHQKSH ASPFRSNNTY ENNLQARPGN DSYGNTRMEG PMRGAQPRHP AAMPEDIRIG GGPPAHADPA MGQTGHGPYG HAGPAFPTVG
0401: RPHFVTTPDG PHLSPVDSYR KQHEITVTGE NIPAPFITFE SSGLPPELLR ELLSAGFPSP TPIQAQTWPI ALQNRDIVAI AKTGSGKTLG YLIPAFTLLR
0501: HCRNDPRNGP TVLILAPTRE LATQIQNEAL RFGRSSRISC TCLYGGAPKG PQLQELERGA DIVVATPGRL NDILEMRKID FQQVSLLVLD EADRMLDMGF
0601: EPQIRKIVNE IPPRRQTLMY TATWPNEVRK IANDLLVNPV QVNIGSVDEL AANKAITQYV EVVPQMEKER RLEQILRSQE RGSKVIIFCA TKRLCDHLSR
0701: SVGRNFGAVV IHGDKSQGER DWVLNQFRSG KSCVLIATDV AARGLDIKDI RVVINYDFPT GVEDYVHRIG RTGRAGATGV AFTFFTEQDW KYAPDLIKVL
0801: EGANQQVPPQ VRDIAMRGGG GGGPGFNQDR RGMVNRFDSG RGGSRWDSAG EFGGRGGGFG GRSGGFGMRD DSFGRGRGFP GPDGGRMNVG RGGFGRFGNN
0901: NMDGRGFGRG GGGGGRGFSR GGGRFDNRRG RSRSRSPDLV RPRRSPSYSR SRSRSYSRSR SRSWSRSRSR SPRRSGHKRS RSYSRSPSPV YERRDRRPRV
1001: SGFDIKPPAE SVVNPDTVGT AASETVVPAP LSERQGNGVV ESEVEAALVD KP

Best Arabidopsis Sequence Match ( AT3G06480.1 )
(BLAST)

0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP

Arabidopsis Description

RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.