Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G100200.1 | Wheat | cytosol | 98.87 | 98.13 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 97.21 | 95.55 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 95.77 | 91.75 |
| OQU84042 | Sorghum | cytosol | 74.47 | 71.04 |
| Zm00001d007719_P010 | Maize | cytosol | 71.45 | 69.92 |
| Zm00001d048632_P001 | Maize | cytosol | 72.43 | 69.39 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 27.04 | 54.82 |
| CDX74101 | Canola | cytosol | 33.91 | 51.26 |
| CDY08048 | Canola | nucleus | 33.84 | 50.91 |
| KRH36905 | Soybean | nucleus | 44.41 | 50.47 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 43.81 | 50.3 |
| Bra001200.1-P | Field mustard | cytosol | 39.5 | 49.71 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 30.06 | 49.2 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 39.2 | 49.15 |
| KRH11875 | Soybean | endoplasmic reticulum | 44.56 | 49.13 |
| AT3G06480.1 | Thale cress | cytosol | 40.03 | 48.71 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 17.82 | 47.58 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.99 | 45.54 |
| TraesCS3D01G412400.2 | Wheat | cytosol | 19.11 | 44.0 |
| TraesCS4D01G148700.1 | Wheat | golgi | 15.63 | 34.44 |
| TraesCS5D01G465100.1 | Wheat | cytosol | 16.54 | 34.43 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 13.82 | 34.27 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 12.69 | 27.63 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 15.11 | 25.35 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 14.5 | 23.27 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 13.44 | 22.22 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 14.43 | 18.6 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3D01G100900 | EnsemblPlants:TraesCS3D01G100900.1 | InterPro:WW_dom | InterPro:WW_dom_sf |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3D:-:53485988..53492183
Molecular Weight (calculated)
142245.0 Da
IEP (calculated)
10.110
GRAVY (calculated)
-0.816
Length
1324 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAGAEAAADS SGPRFAPDDP TLPAPWKALI DGETLYYWNP ETNLTQYDKP GAAAPPLPAA ASTPAPGAFA QPGMQQQQPP QQPQQTAQRP PFQYQGQQAQ
0101: QPPFQYQQQQ EQMPNQQGSQ QPLAPQYPNA HQQPMPYQHG HYMQPQQQYS YQVGQQPQMP QTQYNQGQQM PIPQAANQGQ QPTMPQGAYN QGQRPPMPQA
0201: AYSHGQRPPM PQSAYNQGQQ PQMPHASYNQ GQQLQGTRMP QTQVQHTQQS PGFHQPAQAS QGLQASQPQV PQMSPQQGQL QHGFQFTPQQ GKQPHHGHLV
0301: SQHGQQNTTV KVDAGAHHEG KQTGFSLQLS QQHGQVPLSN QTLPSSHQRP EAHNQLNIHG VGGPPYPAKH HLGGSSPGET NNVSFLSAPA QTHQGGVDTN
0401: YRQQLASSHV VPNHIAPSPG RPPIGFKRGN SEDQFEKNEA LSSGRFDGIN ALHQQPKPAA LPPPQNHLQD MRNGPPYSQP DNFGGYNMAP PHLVQNPLNN
0501: GPFPIGALAR PPSGTFSPPD FPSVASVDAY RQHHEVTAVG ENVPPPFMTF EATGFPPEIL SEVHAAGFLN PTPIQAQTWP VALQSRDIVA IAKTGSGKTL
0601: GYLIPAFVHL RRCQNNPMSG PTVLVLAPTR ELASQIQDEA IKFGRSSRVS CTCLYGGAPK GPQLRELERG ADIVVATPGR LNDILEMRKI SLHQISLLVL
0701: DEADRMLDMG FEPQIRKIVD EIPRNRQTLM YTATWPKEVT KIAGDLLRNP VQINIGSIDE LVANKSITQY VEMVPPMDKQ RRLEQILRAE ERGSKIIIFC
0801: STKKMCDQLA RSIGRSFGAA SIHGDKSQGE RDHILGQFRT GIVPVLVATD VAARGLDIKD IRVVINYDFP TGIEDYVHRI GRTGRAGATG VAYTFFSEQD
0901: WKYAADLVKV LDGTGQQVPP ELQQMAARGA SGAPRNQAGG MSRWDSPGGG TRFESAVGGP GGYGGIREGP GGFGGRDGPG GFIDRDGPGR FGDRDGPGRF
1001: GGRETPDGFG GRDGPGCFDG RMGPGPGGFG GREGPGGFGG REGPGPSGFS GRGGRGSDGF GRRGGASPGR FGGHGGRGDS PGFGGRGRGD SSGFGGRGRG
1101: DFSGGRGGRG RGFGGRGRSD RGPHDRFISD GRGRYDGRRG FDKGRGRSYS RSPDRSRSRG YDRRSDSRSL SSRSRSRSRS WSRSRSRSRS WSRSRSRSRS
1201: RSRSRDQGPV ERRPRVRSGF DVLPPATEAG AAVTGPLPVP LPGSVSDVAA PIPRQSLADA SDMSPMSPGG LVHVQEGAPF MGGNDANISS RQADQPSQAT
1301: DLTIPPSFSA AANFPGPAVQ QDAP
0101: QPPFQYQQQQ EQMPNQQGSQ QPLAPQYPNA HQQPMPYQHG HYMQPQQQYS YQVGQQPQMP QTQYNQGQQM PIPQAANQGQ QPTMPQGAYN QGQRPPMPQA
0201: AYSHGQRPPM PQSAYNQGQQ PQMPHASYNQ GQQLQGTRMP QTQVQHTQQS PGFHQPAQAS QGLQASQPQV PQMSPQQGQL QHGFQFTPQQ GKQPHHGHLV
0301: SQHGQQNTTV KVDAGAHHEG KQTGFSLQLS QQHGQVPLSN QTLPSSHQRP EAHNQLNIHG VGGPPYPAKH HLGGSSPGET NNVSFLSAPA QTHQGGVDTN
0401: YRQQLASSHV VPNHIAPSPG RPPIGFKRGN SEDQFEKNEA LSSGRFDGIN ALHQQPKPAA LPPPQNHLQD MRNGPPYSQP DNFGGYNMAP PHLVQNPLNN
0501: GPFPIGALAR PPSGTFSPPD FPSVASVDAY RQHHEVTAVG ENVPPPFMTF EATGFPPEIL SEVHAAGFLN PTPIQAQTWP VALQSRDIVA IAKTGSGKTL
0601: GYLIPAFVHL RRCQNNPMSG PTVLVLAPTR ELASQIQDEA IKFGRSSRVS CTCLYGGAPK GPQLRELERG ADIVVATPGR LNDILEMRKI SLHQISLLVL
0701: DEADRMLDMG FEPQIRKIVD EIPRNRQTLM YTATWPKEVT KIAGDLLRNP VQINIGSIDE LVANKSITQY VEMVPPMDKQ RRLEQILRAE ERGSKIIIFC
0801: STKKMCDQLA RSIGRSFGAA SIHGDKSQGE RDHILGQFRT GIVPVLVATD VAARGLDIKD IRVVINYDFP TGIEDYVHRI GRTGRAGATG VAYTFFSEQD
0901: WKYAADLVKV LDGTGQQVPP ELQQMAARGA SGAPRNQAGG MSRWDSPGGG TRFESAVGGP GGYGGIREGP GGFGGRDGPG GFIDRDGPGR FGDRDGPGRF
1001: GGRETPDGFG GRDGPGCFDG RMGPGPGGFG GREGPGGFGG REGPGPSGFS GRGGRGSDGF GRRGGASPGR FGGHGGRGDS PGFGGRGRGD SSGFGGRGRG
1101: DFSGGRGGRG RGFGGRGRSD RGPHDRFISD GRGRYDGRRG FDKGRGRSYS RSPDRSRSRG YDRRSDSRSL SSRSRSRSRS WSRSRSRSRS WSRSRSRSRS
1201: RSRSRDQGPV ERRPRVRSGF DVLPPATEAG AAVTGPLPVP LPGSVSDVAA PIPRQSLADA SDMSPMSPGG LVHVQEGAPF MGGNDANISS RQADQPSQAT
1301: DLTIPPSFSA AANFPGPAVQ QDAP
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.