Factsheet for TraesCS4D01G184200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G181800.1	Wheat	nucleus	95.69	98.56
TraesCS4A01G121700.1	Wheat	mitochondrion	95.44	98.17
HORVU4Hr1G053550.2	Barley	mitochondrion	94.55	93.95
Os03t0308500-01	Rice	mitochondrion	87.33	89.48
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	85.93	88.51
Zm00001d047633_P002	Maize	nucleus	84.92	87.24
Zm00001d028898_P011	Maize	cytosol	84.54	86.62
CDX83333	Canola	nucleus	60.58	75.04
GSMUA_Achr1P13000_001	Banana	cytosol	64.39	73.2
VIT_07s0005g01600.t01	Wine grape	cytosol	70.85	72.5
GSMUA_Achr1P24870_001	Banana	cytosol	60.84	72.4
KRG96540	Soybean	cytosol, mitochondrion	70.34	72.27
CDX80096	Canola	cytosol	65.78	71.29
Bra000447.1-P	Field mustard	cytosol	60.71	71.17
Bra004464.1-P	Field mustard	cytosol	65.78	70.9
CDX95719	Canola	cytosol	66.03	70.88
CDY37796	Canola	cytosol	65.91	70.84
KRH68277	Soybean	nucleus	69.96	70.59
AT2G47330.1	Thale cress	cytosol	67.81	70.39
PGSC0003DMT400023277	Potato	cytosol	68.95	70.28
Solyc01g079330.2.1	Tomato	nucleus	68.44	69.77
TraesCS3D01G106000.1	Wheat	cytosol	27.12	43.15
TraesCS3D01G412400.2	Wheat	cytosol	27.5	37.74
TraesCS4D01G148700.1	Wheat	golgi	24.97	32.78
TraesCS5D01G125100.1	Wheat	nucleus	21.8	32.21
TraesCS2D01G149500.1	Wheat	nucleus	32.83	31.39
TraesCS5D01G465100.1	Wheat	cytosol	25.1	31.13
TraesCS5D01G159000.1	Wheat	cytosol	23.95	31.09
TraesCS3D01G131100.11	Wheat	cytosol	23.7	28.64
TraesCS7D01G294500.1	Wheat	nucleus	31.94	24.54
TraesCS4D01G041400.1	Wheat	nucleus	24.33	23.97
TraesCS3D01G202500.3	Wheat	nucleus	24.21	23.61
TraesCS3D01G100900.1	Wheat	cytosol	25.35	15.11

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G184200	EnsemblPlants:TraesCS4D01G184200.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:322283766..322287194

Molecular Weight (calculated)

84949.1 Da

IEP (calculated)

6.304

GRAVY (calculated)

-0.441

Length

789 amino acids

Sequence
(BLAST)

001: MSKRPRLEGF SIPRPTSYSF ERSQPAPRLY VPADDDLDDI AFSDDAAAPS DAGEGGKAED DEIDPLDAFM AEIQEEIRAP PPPPKPKALR PADSDEDDDP
101: MESFLRAKKD AGLTLAADVM NAGYNSDEEV YAAAKAVDAG MMEYDSDDNP IVLDKRKIEP IPPLDHSTIE YEPFTKDFYE EKPSVSGMSV EEVADYMKSL
201: AIRVSGFDVP RPVKNFEDCG FPVPLMNAIA KQGYEKPTTI QCQALPIVLS GRDIIGIAKT GSGKTAAFVL PMIVHIMDQP ELQKEEGPIG VICAPTRELA
301: HQIYLEAKKF AKPYNLQVAA VYGGVSKFEQ FKELKSGCEI VVATPGRLID LLKMKALKMF RATYLVLDEA DRMFDLGFEP QIRSIVGQIR PDRQTLLFSA
401: TMPCKVERLA REILTDPIRV TVGQVGSANE DIKQVVNVLP SDAEKMPWLL EKMPGMIDDG DVLVFATKKA RVDEVENQLN QHGFKVAALH GDKDQASRME
501: TLQKFKSGIY HVLVATDVAA RGLDIKSIKT VVNFDIAKEM DMHIHRIGRT GRAGDKDGTA YTLITQKESR FAGELVHSLI AAGQDVPNEL MDLAMKDGRF
601: RANRDSRKGG KKGGKGKGGG GGGGGGGGGG ARGRGRGIRG VDFGLGIGYG SESGPQVPAP RSATVNVLKT GMMQNFKSSF VSASSSAPSN SAPSRGAPSF
701: VKPTLRGFVS GGTIGGDSGA ARPAPPAPSF VPASRPAGNT KDAARPAPPA PSFVPASRPA GNTNENGNTN PESSKDQRRE RKRPSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.