CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68277	Soybean	nucleus	96.48	94.76
CDX83333	Canola	nucleus	68.75	82.89
VIT_07s0005g01600.t01	Wine grape	cytosol	82.55	82.23
PGSC0003DMT400023277	Potato	cytosol	79.95	79.33
CDY37796	Canola	cytosol	75.39	78.88
CDX80096	Canola	cytosol	74.74	78.85
Bra004464.1-P	Field mustard	cytosol	75.13	78.83
Bra000447.1-P	Field mustard	cytosol	69.01	78.75
Solyc01g079330.2.1	Tomato	nucleus	79.3	78.68
AT2G47330.1	Thale cress	cytosol	77.73	78.55
GSMUA_Achr1P24870_001	Banana	cytosol	67.58	78.28
CDX95719	Canola	cytosol	74.35	77.69
GSMUA_Achr1P13000_001	Banana	cytosol	69.66	77.09
Os03t0308500-01	Rice	mitochondrion	73.57	73.38
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	73.18	73.37
Zm00001d047633_P002	Maize	nucleus	72.66	72.66
TraesCS4A01G121700.1	Wheat	mitochondrion	72.27	72.36
TraesCS4B01G181800.1	Wheat	nucleus	72.14	72.32
Zm00001d028898_P011	Maize	cytosol	71.88	71.69
TraesCS4D01G184200.1	Wheat	mitochondrion	72.27	70.34
HORVU4Hr1G053550.2	Barley	mitochondrion	71.74	69.4
KRH47127	Soybean	nucleus	28.12	42.6
KRH44155	Soybean	cytosol	28.12	42.6
KRH48684	Soybean	cytosol, endoplasmic reticulum	24.87	40.13
KRH03228	Soybean	nucleus	30.34	38.7
KRH57127	Soybean	endoplasmic reticulum, nucleus	30.47	38.24
KRH30661	Soybean	endoplasmic reticulum	25.78	35.04
KRH68534	Soybean	cytosol	26.56	34.75
KRG98124	Soybean	endoplasmic reticulum	25.78	34.68
KRG94409	Soybean	cytosol	26.3	34.35
KRG97325	Soybean	endoplasmic reticulum	26.3	34.18
KRH20283	Soybean	plastid	25.65	33.62
KRH31589	Soybean	nucleus	26.17	33.28
KRH39630	Soybean	nucleus	23.05	32.96
KRH71800	Soybean	plastid	26.17	32.9
KRH58901	Soybean	nucleus	26.17	32.74
KRH38030	Soybean	endoplasmic reticulum	26.04	32.73
KRH42811	Soybean	endoplasmic reticulum	26.3	32.63
KRH74291	Soybean	nucleus	22.79	32.59
KRH03709	Soybean	plastid	24.61	30.98
KRH51212	Soybean	nucleus	25.13	27.53
KRH01937	Soybean	nucleus	25.13	27.34
KRH56577	Soybean	nucleus	25.91	25.68
KRH77709	Soybean	nucleus	36.72	25.54
KRG93254	Soybean	endoplasmic reticulum	25.78	25.52
KRH27757	Soybean	nucleus	36.59	25.38
KRH36905	Soybean	nucleus	26.82	17.68
KRH11875	Soybean	endoplasmic reticulum	26.69	17.07

Protein Annotations

EntrezGene:100814854	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02012157	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_19G217400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1NBD6	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG96540	ProteinID:KRG96540	ProteinID:KRG96540.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI000233E333	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:47007012..47011343

Molecular Weight (calculated)

83920.2 Da

IEP (calculated)

5.868

GRAVY (calculated)

-0.522

Length

768 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGINRQSTYS FERSQPPQRL YVPPSARHGH DHYEDTDIDN IDFDDNNNDD GSKNNNGGGN DDDDEIDPLD AFMEGIHEEM RAAPPPKEKA
101: EDRYRDDEDD DPLESFLKAK KDLGLTLASD ALHAGYDSDE EVYAAAKAVD AGMIEYDSDD NPIVIDKKKI EPIPALDHSS IDYEPFNKDF YEETPSISGM
201: SEQDVSEYRK SLAIRVSGFD VPKPIKTFED CGFPSQIMNA IKKQGYEKPT SIQCQALPVV LSGRDIIGIA KTGSGKTASF VLPMIVHIMD QPELQKEEGP
301: IGVICAPTRE LAHQIYLEAK KFAKAYGVRV SAVYGGMSKL EQFKELKAGC EIVVATPGRL IDMLKMKALT MMRATYLVLD EADRMFDLGF EPQVRSIVGQ
401: IRPDRQTLLF SATMPRKVEK LAREILSDPI RVTVGEVGMA NEDITQVVHV IPSDSEKLPW LLEKLPEMID QGDTLVFASK KATVDEIESQ LAQRGFKVAA
501: LHGDKDQASR MDILQKFKSG LYHVLIATDV AARGLDIKSI KSVVNFDIAK DMDMHVHRIG RTGRAGDKDG VAYTLITLKE ARFAGELVNS LVAAGQNVSV
601: ELMDLAMKDG RFRSKRDARK GGGKKGKGRG GGGRGVRGVD FGLGIGYNSE SNNAPSTTAP SRSAAVNSLR TGMMSQFKSN FVAASSNSQN QGFGSNTSMA
701: ANKRPALPGF VSGGSIGGDI NTYQNTASPN PATSAVNSTS QVSGVNPGQK NTNSSKPKER RRPSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.