CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97325	Soybean	endoplasmic reticulum	93.21	95.26
KRH58901	Soybean	nucleus	85.1	83.71
KRH42811	Soybean	endoplasmic reticulum	85.43	83.36
VIT_06s0004g00850.t01	Wine grape	cytosol	51.32	81.15
PGSC0003DMT400010921	Potato	cytosol	76.32	76.58
Solyc01g005960.2.1	Tomato	plastid	76.16	76.16
PGSC0003DMT400081851	Potato	cytosol	75.5	75.5
KRH38030	Soybean	endoplasmic reticulum	75.5	74.63
KRH71800	Soybean	plastid	74.34	73.49
TraesCS4B01G126000.1	Wheat	cytosol, plastid	72.85	73.21
TraesCS4D01G148700.1	Wheat	golgi	72.85	73.21
HORVU4Hr1G031280.1	Barley	cytosol, plastid	72.52	72.88
Os11t0599500-00	Rice	nucleus, plasma membrane	75.0	72.71
Zm00001d048924_P001	Maize	plasma membrane	72.68	72.2
KXG28851	Sorghum	cytosol, plastid	72.68	70.24
TraesCS4A01G141400.1	Wheat	plastid	72.68	66.92
KRH20283	Soybean	plastid	56.95	58.7
KRH03709	Soybean	plastid	57.28	56.72
KRH44155	Soybean	cytosol	30.46	36.29
KRH47127	Soybean	nucleus	30.13	35.9
KRH30661	Soybean	endoplasmic reticulum	31.13	33.27
KRH03228	Soybean	nucleus	33.11	33.22
KRH48684	Soybean	cytosol, endoplasmic reticulum	25.99	32.98
KRG98124	Soybean	endoplasmic reticulum	31.13	32.92
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.28	32.84
KRH39630	Soybean	nucleus	28.81	32.4
KRH74291	Soybean	nucleus	28.48	32.03
KRG94409	Soybean	cytosol	28.64	29.42
KRH68534	Soybean	cytosol	28.48	29.3
KRH56577	Soybean	nucleus	34.44	26.84
KRG93254	Soybean	endoplasmic reticulum	34.44	26.8
KRH51212	Soybean	nucleus	30.63	26.39
KRH01937	Soybean	nucleus	30.63	26.2
KRG96540	Soybean	cytosol, mitochondrion	33.28	26.17
KRH68277	Soybean	nucleus	33.11	25.58
KRH36905	Soybean	nucleus	34.6	17.94
KRH11875	Soybean	endoplasmic reticulum	34.77	17.49
KRH77709	Soybean	nucleus	31.29	17.12
KRH27757	Soybean	nucleus	31.29	17.07

Protein Annotations

EntrezGene:100784557	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02007146	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_11G256200
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LN13	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH31589	ProteinID:KRH31589	ProteinID:KRH31589.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233D6E9	SEG:seg

Description

hypothetical protein

Coordinates

chr11:-:34599042..34607767

Molecular Weight (calculated)

66023.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.541

Length

604 amino acids

Sequence
(BLAST)

001: MRTSWADLAA NSAPENAGTS NSTAPSRPVY VPPHLRNRGP SESPAPPPTS NNNNNNNNNN NNNNNNNNNN AGSRWGALPA RNGWGNRSCG SWDRREVNPF
101: GDQEEAAAAF GGEEQQENTG INFDAYEDIP VETSGENVPP AVNTFAEIDL GDALSQNIRR CKYVKPTPVQ RHAIPISLAG RDLMACAQTG SGKTAAFCFP
201: IINGIMRGQA QPLQRPPRGV RIVYPLALVL SPTRELSMQI HEEARKFSYQ TGVRVVVAYG GAPINQQLRE LERGVDILVA TPGRLVDLLE RARVSLQMIR
301: YLALDEADRM LDMGFEPQIR KIVEQMDMPP AGARQTMLFS ATFPKEIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEYV QESDKRSHLM DLLHAQKANG
401: VQGKQALTLV FVETKKGADS LEHWLCRNSF PATTIHGDRT QQERELALRS FKSGNTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: KKGLATAFFN DNNASLARAL ADLMQEANQE VPDWLSRYAA RSSFGGGRNR RSGGSRFGGR DFRREGSFSR GGSDYYSAGN NSSGYGNSGV YGAGYGPGVT
601: SAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.