CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 8
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98124	Soybean	endoplasmic reticulum	97.17	96.15
VIT_06s0004g08160.t01	Wine grape	plastid	76.64	76.23
Solyc09g015930.2.1	Tomato	plastid	73.1	74.01
PGSC0003DMT400071932	Potato	cytosol	13.98	71.17
KRH47127	Soybean	nucleus	30.8	34.32
KRH44155	Soybean	cytosol	30.27	33.73
KRH48684	Soybean	cytosol, endoplasmic reticulum	27.61	32.77
KRG97325	Soybean	endoplasmic reticulum	33.1	31.64
KRH38030	Soybean	endoplasmic reticulum	33.98	31.42
KRH71800	Soybean	plastid	33.81	31.26
KRH31589	Soybean	nucleus	33.27	31.13
KRH58901	Soybean	nucleus	33.81	31.11
KRH42811	Soybean	endoplasmic reticulum	33.81	30.86
KRH20283	Soybean	plastid	31.86	30.72
KRH03709	Soybean	plastid	31.68	29.34
KRH03228	Soybean	nucleus	31.15	29.24
KRH74291	Soybean	nucleus	27.43	28.86
KRH39630	Soybean	nucleus	27.43	28.86
KRH57127	Soybean	endoplasmic reticulum, nucleus	30.8	28.43
KRH68534	Soybean	cytosol	29.2	28.11
KRG94409	Soybean	cytosol	29.03	27.89
KRG96540	Soybean	cytosol, mitochondrion	35.04	25.78
KRH51212	Soybean	nucleus	31.15	25.11
KRH68277	Soybean	nucleus	34.51	24.94
KRH01937	Soybean	nucleus	31.15	24.93
KRH56577	Soybean	nucleus	29.38	21.42
KRG93254	Soybean	endoplasmic reticulum	29.2	21.26
Os02t0150000-00	Rice	mitochondrion	6.19	20.23
KRH27757	Soybean	nucleus	32.39	16.53
KRH77709	Soybean	nucleus	32.21	16.49
KRH36905	Soybean	nucleus	29.56	14.33
KRH11875	Soybean	endoplasmic reticulum	29.38	13.82

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02007053	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_11G199100
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LLY6	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH30661	ProteinID:KRH30661	ProteinID:KRH30661.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF556	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00023CBFA7	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:27706289..27717778

Molecular Weight (calculated)

61577.2 Da

IEP (calculated)

7.045

GRAVY (calculated)

-0.315

Length

565 amino acids

Sequence
(BLAST)

001: MSYVPPHLRN PSSTTVATAR TPSVTLDNHH HHHHKLAFAS NTTTNCSPSL SSFHNNASRR SSAAPPSPRI LANPDTIFPQ WQPSERVSRM TPEQIEEVRS
101: RLNLDVAVAS DSPPAPAPIE SFTDMCLHPS IMKDIAYHEY TRPTSIQAQA MPIALSGRDL LGCAETGSGK TAAFTIPMIQ HCLAQHPIRR NDGPLALVLA
201: PTRELAQQIE KEVKAFSRSL ESLKTAIVVG GTNIEKQRSE LRAGVEIAVA TPGRFIDHLQ QGNTSLSRIS FVVLDEADRM LDMGFEPQIR EVMRNLPEKH
301: QTLLFSATMP VEIEELSKEY LANPVQVKVG KVSSPTTNVS QTLVKISENE KIDRLLDLLV EEASQAEKCG HPCPLTIVFV ERKTRCDEVA EALVAQGLSA
401: VSLHGGRSQS EREAALHDFR SGSTNILVAT DVASRGLDVT GVSHVINLDL PKTMEDYVHR IGRTGRAGST GLATSFYTDR DMFLVANIRK AIADAESGNT
501: LTFATGKVAR RKEKEAAAAQ KEANIALSKQ LGLGAASMNI EDKYKFMITA TNTKKEGAAD SAWDD

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.