CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47127	Soybean	nucleus	98.42	98.42
KRH48684	Soybean	cytosol, endoplasmic reticulum	84.22	89.71
Solyc12g044860.1.1	Tomato	nucleus	80.67	85.39
PGSC0003DMT400083878	Potato	cytosol	84.02	85.03
GSMUA_Achr10P...	Banana	cytosol	83.23	84.91
Os01t0197200-01	Rice	plasma membrane	82.05	84.21
KXG31614	Sorghum	cytosol	81.66	84.15
CDY10596	Canola	nucleus	82.64	83.97
Bra030884.1-P	Field mustard	nucleus	82.45	83.77
CDY02459	Canola	cytosol	82.45	83.77
VIT_09s0002g02100.t01	Wine grape	cytosol	84.62	83.3
TraesCS3D01G106000.1	Wheat	cytosol	81.26	83.06
TraesCS3A01G103700.1	Wheat	cytosol	81.07	82.86
TraesCS3B01G121100.1	Wheat	cytosol	79.49	82.58
AT1G55150.2	Thale cress	cytosol	80.67	77.76
Zm00001d039452_P002	Maize	cytosol	82.45	75.59
HORVU3Hr1G018850.7	Barley	cytosol	78.5	72.76
KRH03228	Soybean	nucleus	70.02	58.97
KRH57127	Soybean	endoplasmic reticulum, nucleus	69.63	57.68
KRH39630	Soybean	nucleus	39.45	37.24
KRH74291	Soybean	nucleus	39.25	37.06
KRG97325	Soybean	endoplasmic reticulum	36.29	31.13
KRH38030	Soybean	endoplasmic reticulum	37.48	31.1
KRH58901	Soybean	nucleus	37.28	30.78
KRH71800	Soybean	plastid	36.88	30.61
KRH56577	Soybean	nucleus	46.75	30.58
KRG93254	Soybean	endoplasmic reticulum	46.75	30.54
KRH42811	Soybean	endoplasmic reticulum	37.28	30.53
KRH31589	Soybean	nucleus	36.29	30.46
KRH30661	Soybean	endoplasmic reticulum	33.73	30.27
KRG98124	Soybean	endoplasmic reticulum	33.92	30.12
KRH20283	Soybean	plastid	34.71	30.03
KRH68534	Soybean	cytosol	34.52	29.81
KRG94409	Soybean	cytosol	34.32	29.59
KRH03709	Soybean	plastid	34.12	28.36
KRG96540	Soybean	cytosol, mitochondrion	42.6	28.12
KRH68277	Soybean	nucleus	42.41	27.49
KRH01937	Soybean	nucleus	34.91	25.07
KRH51212	Soybean	nucleus	34.52	24.96
KRH36905	Soybean	nucleus	47.73	20.77
KRH11875	Soybean	endoplasmic reticulum	48.13	20.32
KRH77709	Soybean	nucleus	40.04	18.39
KRH27757	Soybean	nucleus	40.04	18.34

Protein Annotations

EntrezGene:100781619	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EMBL:ACUP02004908	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_08G193700
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KUU8	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH44155	ProteinID:KRH44155	ProteinID:KRH44155.1	ProteinID:KRH44156.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002338B1C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:15604324..15613199

Molecular Weight (calculated)

56256.0 Da

IEP (calculated)

9.273

GRAVY (calculated)

-0.505

Length

507 amino acids

Sequence
(BLAST)

001: MSRYDSRSGD PASYRDRRSD SGLGAPTGFG GSVQHSSSNR RDYDDGGSPK RNLSLDGLPH FEKNFYIESP AVRAMTDAEV NEYRQQREIT VEGRDIPKPV
101: KTFHDAGFPE YVLQEITKAG FTEPTPIQSQ GWPMALKGRD LIGIAETGSG KTLAYLLPAI VHVNAQPILN PGDGPIVLVL APTRELAVQI QQETTKFGAS
201: SRIKSTCIYG GVPKGPQVRD LQKGVEIVIA TPGRLIDMLE SNHTNLQRVT YLVLDEADRM LDMGFDPQLR KIVSQIRPDR QTLYWSATWP KEVEQLARKF
301: LYNPYKVIIG SSDLKANHAI RQYVDIVSEK QKYDKLVKLL EDIMDGSRIL IFMDTKKGCD QITRQLRMDG WPALSIHGDK SQAERDWVLS EFKSGKSPIM
401: TATDVAARGL DVKDVKYVVN YDFPGSLEDY VHRIGRTGRA GAKGTAYTYF TAANARFAKE LIAILEEAGQ KVSPELAAMG RGAPPPPSGP RGFQDRGRGY
501: GSSRPWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.