Factsheet for TraesCS3A01G103700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G106000.1	Wheat	cytosol	99.4	99.4
TraesCS3B01G121100.1	Wheat	cytosol	97.38	98.98
Os01t0197200-01	Rice	plasma membrane	94.76	95.14
KXG31614	Sorghum	cytosol	92.54	93.29
GSMUA_Achr10P...	Banana	cytosol	85.28	85.11
HORVU3Hr1G018850.7	Barley	cytosol	93.15	84.46
Solyc12g044860.1.1	Tomato	nucleus	80.65	83.51
Zm00001d039452_P002	Maize	cytosol	91.94	82.46
PGSC0003DMT400083878	Potato	cytosol	83.27	82.44
KRH44155	Soybean	cytosol	82.86	81.07
KRH47127	Soybean	nucleus	82.46	80.67
CDY10596	Canola	nucleus	81.05	80.56
VIT_09s0002g02100.t01	Wine grape	cytosol	83.47	80.39
Bra030884.1-P	Field mustard	nucleus	80.85	80.36
CDY02459	Canola	cytosol	80.85	80.36
KRH48684	Soybean	cytosol, endoplasmic reticulum	71.37	74.37
AT1G55150.2	Thale cress	cytosol	78.23	73.76
TraesCS3A01G416900.1	Wheat	cytosol	67.74	58.54
TraesCS3A01G130200.4	Wheat	cytosol	48.79	37.23
TraesCS5A01G114400.1	Wheat	nucleus	40.12	37.2
TraesCS3A01G194200.1	Wheat	nucleus	46.98	29.76
TraesCS5A01G454600.1	Wheat	golgi	37.7	29.4
TraesCS5A01G153700.1	Wheat	cytosol	33.67	28.64
TraesCS4A01G121700.1	Wheat	mitochondrion	43.15	27.9
TraesCS1A01G415500.1	Wheat	cytosol	35.08	27.02
TraesCS7A01G374000.1	Wheat	nucleus	38.51	27.02
TraesCS4A01G141400.1	Wheat	plastid	35.28	26.68
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	34.88	26.29
TraesCS4A01G270200.1	Wheat	nucleus	35.28	24.07
TraesCS7A01G298800.3	Wheat	nucleus	42.14	19.5
TraesCS3A01G100200.1	Wheat	cytosol	47.58	17.69

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3A01G103700	EnsemblPlants:TraesCS3A01G103700.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:67152166..67155578

Molecular Weight (calculated)

54589.3 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.328

Length

496 amino acids

Sequence
(BLAST)

001: MSRFDGRAAD PSSYRDRRSE GAFGGGTRAF APSGKPDAAA AAAAAELDGL PRFEKNFYVE VPAVAGMTAE EVEAYRRRRE ITVEGNDVPK PVRDFRDVGF
101: PDYVLQEITK AGFTEPTPIQ SQGWPMALKG RDLIGIAETG SGKTLAYLLP AIVHVNAQPI LAPGDGPIVL VLAPTRELAV QIQQETTKFG ASSKIKSTCI
201: YGGVPKGPQV RDLQKGVEII IATPGRLIDM IESHHTNLRR VTYLVLDEAD RMLDMGFEPQ IKKIVSQIRP DRQTLYWSAT WPKEVELLAR TFLFDPYKVI
301: IGSEELKANH AISQHVEILS ESQKYNKLVN LLEDIMDGSR ILIFMDTKKG CDQITRQLRM DGWPALSIHG DKSQAERDWV LSEFKSGKSP IMTATDVAAR
401: GLDVKDVKYV INYDFPGSLE DYVHRIGRTG RAGATGTAYS FFTAANARFA KDLISILVEA GQKVSPELAN MGRGAPPPSL GHRDRYRGHG GGRSWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.