Factsheet for TraesCS3A01G122100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G022710.1	Barley	mitochondrion	96.05	99.06
TraesCS3B01G141300.1	Wheat	cytosol	92.4	99.02
Os02t0150100-02	Rice	cytosol	66.26	94.78
TraesCS5A01G153700.1	Wheat	cytosol	77.36	87.31
Zm00001d047502_P001	Maize	extracellular	80.4	85.6
EER92293	Sorghum	cytosol	80.4	85.6
CDY38671	Canola	cytosol	63.98	81.12
CDY61276	Canola	cytosol	63.83	80.92
CDX87315	Canola	cytosol	63.68	80.89
CDY39973	Canola	cytosol	63.68	80.89
KRH68534	Soybean	cytosol	70.97	79.56
KRG94409	Soybean	cytosol	70.97	79.42
VIT_09s0002g08120.t01	Wine grape	cytosol	70.67	79.22
Bra008471.1-P	Field mustard	cytosol	67.02	78.33
GSMUA_Achr2P09160_001	Banana	cytosol	65.05	78.25
PGSC0003DMT400036663	Potato	cytosol	69.76	77.93
Bra018133.1-P	Field mustard	cytosol	69.45	77.72
PGSC0003DMT400073340	Potato	cytosol	69.3	77.42
Solyc03g117440.2.1	Tomato	cytosol, nucleus	69.76	77.14
Bra035177.1-P	Field mustard	cytosol	68.84	77.04
AT5G51280.1	Thale cress	cytosol	68.84	76.65
Solyc06g068280.2.1	Tomato	extracellular, nucleus	69.3	76.64
CDX67949	Canola	cytosol	62.92	76.1
AT4G33370.1	Thale cress	cytosol	62.31	75.65
Bra003568.1-P	Field mustard	cytosol	66.72	74.28
GSMUA_Achr1P13820_001	Banana	mitochondrion	56.38	68.45
CDX79384	Canola	cytosol	40.12	67.69
TraesCS3A01G103700.1	Wheat	cytosol	26.29	34.88
TraesCS3A01G416900.1	Wheat	cytosol	25.84	29.62
TraesCS5A01G114400.1	Wheat	nucleus	24.01	29.53
TraesCS5A01G454600.1	Wheat	golgi	25.53	26.42
TraesCS3A01G130200.4	Wheat	cytosol	25.84	26.15
TraesCS4A01G141400.1	Wheat	plastid	25.99	26.07
TraesCS4A01G121700.1	Wheat	mitochondrion	29.79	25.55
TraesCS7A01G374000.1	Wheat	nucleus	27.05	25.18
TraesCS1A01G415500.1	Wheat	cytosol	24.32	24.84
TraesCS4A01G270200.1	Wheat	nucleus	25.68	23.25
TraesCS3A01G194200.1	Wheat	nucleus	25.08	21.07
TraesCS7A01G298800.3	Wheat	nucleus	28.57	17.54
TraesCS3A01G100200.1	Wheat	cytosol	25.84	12.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3A01G122100	EnsemblPlants:TraesCS3A01G122100.1	TIGR:cd00079	TIGR:cd00268
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:95944722..95948768

Molecular Weight (calculated)

72664.6 Da

IEP (calculated)

8.302

GRAVY (calculated)

-0.230

Length

658 amino acids

Sequence
(BLAST)

001: MHLTANGGLL RSLVESIYSP LSSPSRARRN PHLSLSFLRT LTPAMPPGAA AAAKSDDEDD YEEYIPVSKR RAMEADRLRH QRLSKPAAAA SAGSLPPPPP
101: PPAANPAAAP DDAAPAAKPS LLVTSTQLKR AAPEVTATEQ IILQEKEMID NLSNKNTLMS VRELAKGITY TEPLRTGWKP PLRLRRMPRT KADELRRKWH
201: ILVEGDEIPP PARDFRDLRF PEPVLRMLRE KGIVQPTPIQ VQGLPVVLSG RDMIGIAFTG SGKTLVFVLP LIMVALQEEM LMPIVPGEGP FGMIICPSRE
301: LAKQTYDVID MFLTPLKQAG FPEIRPLLCI GGIDMRTQLD VVKKGVHIVV ATPGRLKDLL AKKKMNLDNC RYLTLDEADR LVDLGFEDDI REVFDHFKAQ
401: RQTLLFSATM PKKIQNFAKS ALVKPVIVNV GRAGAANLDV IQEVEYVKED ARIIYLLECL QKTPPPVLIF CENKADVDYI HEYLLLKGVE AVAIHGGKDQ
501: EERQNAIEFF KNGKKDVLVA TDVASKGLDF PDIQHVINYD MPAEIENYVH RIGRTGRCGK TGIATTFINK NQTETTLLDL KHLLKEAKQR IPPVLAELVD
601: PLEDAEAIAK ESGVKGCAFC GGLGHRLADC PKLEHQKSVA IAGSRRDYYG GGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.