Factsheet for Bra008471.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38671	Canola	cytosol	91.3	99.04
Bra018133.1-P	Field mustard	cytosol	95.2	91.16
Bra035177.1-P	Field mustard	cytosol	94.85	90.82
AT5G51280.1	Thale cress	cytosol	93.96	89.51
Bra003568.1-P	Field mustard	cytosol	89.34	85.11
AT4G33370.1	Thale cress	cytosol	80.46	83.58
VIT_09s0002g08120.t01	Wine grape	cytosol	86.86	83.3
PGSC0003DMT400036663	Potato	cytosol	86.5	82.68
KRH68534	Soybean	cytosol	86.15	82.62
KRG94409	Soybean	cytosol	86.15	82.48
Solyc03g117440.2.1	Tomato	cytosol, nucleus	86.5	81.85
PGSC0003DMT400073340	Potato	cytosol	84.01	80.31
Os02t0150100-02	Rice	cytosol	65.36	80.0
Solyc06g068280.2.1	Tomato	extracellular, nucleus	84.19	79.66
GSMUA_Achr2P09160_001	Banana	cytosol	73.71	75.87
TraesCS3B01G141300.1	Wheat	cytosol	78.15	71.66
HORVU5Hr1G048040.1	Barley	plastid	71.76	70.63
Zm00001d047502_P001	Maize	extracellular	76.55	69.74
EER92293	Sorghum	cytosol	76.02	69.26
HORVU3Hr1G022710.1	Barley	mitochondrion	77.98	68.81
TraesCS5D01G159000.1	Wheat	cytosol	73.71	68.26
TraesCS5B01G152200.1	Wheat	cytosol	73.53	67.98
TraesCS5A01G153700.1	Wheat	cytosol	69.8	67.41
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	78.33	67.02
GSMUA_Achr1P13820_001	Banana	mitochondrion	62.52	64.94
Os06t0697200-00	Rice	cytosol	71.23	64.78
Bra030884.1-P	Field mustard	nucleus	28.42	32.06
Bra035857.1-P	Field mustard	cytosol	30.73	29.27
Bra035518.1-P	Field mustard	nucleus	27.18	28.54
Bra023227.1-P	Field mustard	nucleus	27.18	28.18
Bra000447.1-P	Field mustard	cytosol	33.21	27.79
Bra003341.1-P	Field mustard	cytosol	29.66	27.38
Bra016869.1-P	Field mustard	cytosol, plastid	29.31	27.09
Bra007399.1-P	Field mustard	cytosol	29.13	26.84
Bra004464.1-P	Field mustard	cytosol	33.75	25.96
Bra007402.1-P	Field mustard	cytosol	29.48	25.86
Bra003343.1-P	Field mustard	cytosol	29.48	25.82
Bra040699.1-P	Field mustard	cytosol	27.89	25.78
Bra021872.1-P	Field mustard	nucleus	29.84	25.49
Bra001004.1-P	Field mustard	cytosol	28.06	24.84
Bra023478.1-P	Field mustard	cytosol	26.82	22.34
Bra014568.1-P	Field mustard	cytosol	26.11	22.07
Bra029779.1-P	Field mustard	nucleus	30.73	19.5
Bra025856.1-P	Field mustard	nucleus	33.57	16.14
Bra001200.1-P	Field mustard	cytosol	28.95	15.49

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra008471	EnsemblPlants:Bra008471.1	EnsemblPlants:Bra008471.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
GO:GO:0008270	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CW74	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271
PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
UniParc:UPI0002546C40	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

AT5G51280 (E=4e-193) | DEAD-box protein abstrakt, putative

Coordinates

chrA02:+:15834817..15836803

Molecular Weight (calculated)

62929.9 Da

IEP (calculated)

6.988

GRAVY (calculated)

-0.266

Length

563 amino acids

Sequence
(BLAST)

001: MEDDDDYVEY VPVAKRRAME EQKVLQRKGK VLELEEEAEK EKLAESKPSL LVQATQLKKD IPKVSATEQI ILQEKEMMEH LSDKKTLMSV RELAKGITYT
101: EPLLTGWKPP LHVRKMSRKQ MDLIRKQWHI IVSGEEIPPP IKNFKDMKFP RAVLDTLKEK GIVQPTPIQV QGLHVILSGR DMIGIAFTGS GKTLVFVLPM
201: IMIALQEEEM MPIGPGEGPI GLIAGYPPLR SLLCIGGVDM RSQLDVVKRG VHIVVATPGR LKDLLAKKKM SLDACRYLTL DEADRLVDLG FEDDIREVFD
301: HFKSQRQTLL FSATMPTKIQ IFARSALVKP VTVNVGRAGA ANLDVIQEVE YVKQEAKIVY LLECLQKTSP PVLIFCENKD DVDDIHEYLL LKGVEAVAIH
401: GGKDQEDREY AISSFKAGKK DVLVATDVAS KGLDFPDIQH VINYDMPAEI ENYVHRIGRT GRCGKTGIAT TFINKNQSET TLLDLKHLLQ EAKQRIPPVL
501: AELKDPMEEA ETIANASGVK GCAYCGGLGH RIRDCPKLEH QKSVAISNSR KDYFGSGGYR GEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.