Factsheet for HORVU5Hr1G048040.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0150100-02	Rice	cytosol	73.78	91.74
TraesCS5D01G159000.1	Wheat	cytosol	94.76	89.14
TraesCS5B01G152200.1	Wheat	cytosol	94.76	89.0
TraesCS5A01G153700.1	Wheat	cytosol	90.38	88.68
HORVU3Hr1G022710.1	Barley	mitochondrion	88.46	79.31
CDX87315	Canola	cytosol	69.23	76.45
CDY61276	Canola	cytosol	68.88	75.92
CDY39973	Canola	cytosol	68.71	75.87
Zm00001d047502_P001	Maize	extracellular	81.82	75.73
EER92293	Sorghum	cytosol	81.82	75.73
CDY38671	Canola	cytosol	68.53	75.53
VIT_09s0002g08120.t01	Wine grape	cytosol	76.05	74.11
KRH68534	Soybean	cytosol	75.87	73.94
KRG94409	Soybean	cytosol	75.7	73.64
PGSC0003DMT400036663	Potato	cytosol	75.17	73.01
Solyc03g117440.2.1	Tomato	cytosol, nucleus	75.0	72.1
GSMUA_Achr2P09160_001	Banana	cytosol	68.88	72.03
PGSC0003DMT400073340	Potato	cytosol	74.13	71.99
Bra018133.1-P	Field mustard	cytosol	73.95	71.94
AT4G33370.1	Thale cress	cytosol	68.01	71.77
Bra008471.1-P	Field mustard	cytosol	70.63	71.76
Solyc06g068280.2.1	Tomato	extracellular, nucleus	74.13	71.26
Bra035177.1-P	Field mustard	cytosol	73.08	71.09
AT5G51280.1	Thale cress	cytosol	73.08	70.73
CDX67949	Canola	cytosol	66.96	70.4
Bra003568.1-P	Field mustard	cytosol	70.1	67.85
GSMUA_Achr1P13820_001	Banana	mitochondrion	63.64	67.16
CDX79384	Canola	cytosol	40.38	59.23
HORVU1Hr1G083090.1	Barley	cytosol	17.13	39.04
HORVU3Hr1G031710.1	Barley	mitochondrion	15.38	33.72
HORVU3Hr1G018850.7	Barley	cytosol	29.9	31.26
HORVU3Hr1G092610.1	Barley	cytosol	29.37	29.27
HORVU3Hr1G092600.1	Barley	cytosol	29.37	29.27
HORVU5Hr1G037290.3	Barley	nucleus	26.57	28.68
HORVU7Hr1G084210.1	Barley	cytosol	29.55	27.7
HORVU4Hr1G031280.1	Barley	cytosol, plastid	28.32	26.96
HORVU1Hr1G091050.3	Barley	nucleus	27.62	26.42
HORVU5Hr1G109340.2	Barley	plastid	28.15	24.32
HORVU4Hr1G053550.2	Barley	mitochondrion	32.34	23.3
HORVU3Hr1G024610.13	Barley	cytosol, plastid	27.97	22.63
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	14.69	22.11
HORVU4Hr1G007110.17	Barley	mitochondrion	28.32	21.04
HORVU6Hr1G080730.2	Barley	cytosol	11.89	20.8
HORVU2Hr1G025790.1	Barley	nucleus	31.29	17.57
HORVU0Hr1G020490.1	Barley	nucleus	31.29	16.79
HORVU3Hr1G018170.3	Barley	cytosol	28.32	11.72

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287R3B1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	EnsemblPlantsGene:HORVU5Hr1G048040
EnsemblPlants:HORVU5Hr1G048040.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B4888CB	InterPro:Znf_CCHC	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:372901126..372904088

Molecular Weight (calculated)

63365.4 Da

IEP (calculated)

7.301

GRAVY (calculated)

-0.234

Length

572 amino acids

Sequence
(BLAST)

001: MNPSSSXPVS LPPPPPPPTN NSTPATKPSL LITSTLLKRA APEITPTERL IQEEQKIDEE ASYRTTLKPV GEIAKDITYT EPLHTGWKPP LRLRYMPRHK
101: ADELRRKWHI LVEGDEIPPP ARDFCDLRFP EPISRMLREK GIVQPTPIQV QGLPVALSGR DMIGIAFTGS GKTLVFVLPL IMVALQEEMM MPIVPGEGPF
201: GMIICPSREL AKQTYDVIDM FLTPLKQAGF PEIRPLLCIG GVDMRTQLDV VKKGVHIVVA TPGRLKDLLA KKKMNLDNCR YLTLDEADRL VDLGFEDDIR
301: EVLNHFKVKD NFKAPRQTLL FSATMPKKIQ NFAMSALVKP VVVNVGRAGA ANLDVIQEVE YVKEDARIIY LLECLQKTPP PALIFCENKA DVDYIHEYLL
401: LKGVEAVAIH GGKDQEERQG AIEFFKNGKK DVLVATDVAS KGLDFPDIQH VINYDMPAEI ENYVHRIGRT GRCGKTGIAT TFINKNQTET TLLDLKHLLK
501: EAKQRIPPVL AELVDPLEDA EAIAKASGVK GCASCGGLGH RIADCPKLEH QRSAAMAEKR DYYGGGGYRG EI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.