Factsheet for HORVU1Hr1G091050.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G083090.1	Barley	cytosol	38.8	92.43
TraesCS1B01G445500.1	Wheat	cytosol	67.89	88.84
HORVU3Hr1G031710.1	Barley	mitochondrion	37.96	86.97
TraesCS1A01G415500.1	Wheat	cytosol	87.79	81.52
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	43.81	68.95
CDX84672	Canola	cytosol	47.49	63.53
HORVU6Hr1G080730.2	Barley	cytosol	32.94	60.24
CDY53786	Canola	nucleus	55.85	56.61
GSMUA_Achr3P01410_001	Banana	nucleus	49.83	56.55
OQU83862	Sorghum	nucleus	60.37	56.23
Bra021872.1-P	Field mustard	nucleus	60.2	54.63
PGSC0003DMT400043101	Potato	nucleus	64.55	54.6
VIT_09s0054g01810.t01	Wine grape	cytosol	64.55	54.44
VIT_03s0038g00010.t01	Wine grape	cytosol	64.21	53.93
KRH51212	Soybean	nucleus	63.21	53.92
CDY37696	Canola	nucleus	53.18	53.9
KRH01937	Soybean	nucleus	63.55	53.82
HORVU4Hr1G007110.17	Barley	mitochondrion	69.23	53.77
Solyc02g081290.2.1	Tomato	nucleus	58.53	53.6
Solyc02g068190.1.1	Tomato	cytosol, nucleus	59.2	53.47
CDX79541	Canola	nucleus	56.02	53.26
PGSC0003DMT400024330	Potato	cytosol	58.7	52.47
AT2G33730.1	Thale cress	nucleus	63.71	51.98
HORVU3Hr1G018850.7	Barley	cytosol	27.42	29.98
HORVU4Hr1G031280.1	Barley	cytosol, plastid	29.6	29.45
HORVU5Hr1G037290.3	Barley	nucleus	26.09	29.43
HORVU3Hr1G092600.1	Barley	cytosol	27.76	28.92
HORVU3Hr1G092610.1	Barley	cytosol	27.76	28.92
HORVU7Hr1G084210.1	Barley	cytosol	28.26	27.7
HORVU5Hr1G048040.1	Barley	plastid	26.42	27.62
HORVU5Hr1G109340.2	Barley	plastid	29.93	27.04
HORVU3Hr1G022710.1	Barley	mitochondrion	26.92	25.24
HORVU3Hr1G024610.13	Barley	cytosol, plastid	27.59	23.34
HORVU4Hr1G053550.2	Barley	mitochondrion	28.93	21.79
HORVU2Hr1G025790.1	Barley	nucleus	28.93	16.98
HORVU0Hr1G020490.1	Barley	nucleus	29.77	16.7
HORVU3Hr1G018170.3	Barley	cytosol	27.42	11.87

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	UniProt:A0A287GPX4	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU1Hr1G091050	EnsemblPlants:HORVU1Hr1G091050.3	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B4727D1	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:+:547352417..547354619

Molecular Weight (calculated)

66750.8 Da

IEP (calculated)

9.573

GRAVY (calculated)

-0.555

Length

598 amino acids

Sequence
(BLAST)

001: RDSSSPRREY QGRHRDRRDR DRNRDRDRDG REKDRAVKMA ERAREKELEA IREQYLGGSD GKKPKTVAKL RDRFRFDWAS TDDTSRVDAA NDQPAHGGLL
101: LYGRGFLAGI DRREQKKAAA AALQKESGAG AAARYDAIDM RVDRHWTDKR AEEMTERDWR ILREDFGISY RGSRVPRPMR SWAESGLGAE LLRNVDRAGY
201: RKPTPIQMAA VPLGLQRRDV IGVAQTGSGK TAAFVLPMLA YIAGMAPPTS HSEEGEGPYA LILGPTRELA QKIERETVKL AAHLRIRVVS IVGGKADGQS
301: TIQKQASMLE QGCEVIVATP GRLLDCLESR YAVLNRCSYV VLDEADRMID MGFEPQVVGV LDAMPSSHLK PESADEELDE ARTYRTTHMF SATMPPAVER
401: LARKYLRNPV AVTVGSAGKA ADLVAQNVVM VKVQEKMPRL TRILADLGKD RRTAIVFCNT KNSVEKLTND LEYAGMCRVT ALQGGKSQDE RKASLEGFRN
501: GRFNVLVATD LAARGIDVPE VAHVINYEMP SSIDLYTHRI GRTGRAGKKG LSTSFLTMED TDIFYDLKQM LVQSNCPVPP ELARHEAYVQ VQSRVCSW

Best Arabidopsis Sequence Match ( AT1G28180.1 )
(BLAST)

001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.