Factsheet for HORVU4Hr1G007110.17

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G270200.1	Wheat	nucleus	93.9	99.45
TraesCS4B01G043900.1	Wheat	nucleus	93.9	99.18
TraesCS4D01G041400.1	Wheat	nucleus	96.1	92.38
Zm00001d033704_P007	Maize	extracellular	86.49	90.24
Os03t0708600-02	Rice	nucleus	85.32	89.27
Zm00001d013453_P001	Maize	nucleus	84.94	89.1
KXG37746	Sorghum	nucleus	88.18	84.03
GSMUA_Achr3P01410_001	Banana	nucleus	55.97	81.78
KRH01937	Soybean	nucleus	72.34	78.9
KRH51212	Soybean	nucleus	71.82	78.89
PGSC0003DMT400043101	Potato	nucleus	71.69	78.08
CDX84672	Canola	cytosol	45.32	78.08
HORVU6Hr1G080730.2	Barley	cytosol	32.99	77.68
CDY53786	Canola	nucleus	59.35	77.46
VIT_03s0038g00010.t01	Wine grape	cytosol	71.3	77.11
Solyc02g081290.2.1	Tomato	nucleus	65.32	77.03
VIT_09s0054g01810.t01	Wine grape	cytosol	70.91	77.01
Bra021872.1-P	Field mustard	nucleus	65.06	76.02
HORVU1Hr1G083090.1	Barley	cytosol	24.42	74.9
CDY37696	Canola	nucleus	57.14	74.58
AT2G33730.1	Thale cress	nucleus	70.26	73.81
PGSC0003DMT400024330	Potato	cytosol	62.86	72.35
Solyc02g068190.1.1	Tomato	cytosol, nucleus	62.08	72.21
CDX79541	Canola	nucleus	58.7	71.86
HORVU3Hr1G031710.1	Barley	mitochondrion	23.51	69.35
HORVU1Hr1G091050.3	Barley	nucleus	53.77	69.23
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	28.44	57.63
HORVU5Hr1G037290.3	Barley	nucleus	21.43	31.13
HORVU3Hr1G018850.7	Barley	cytosol	22.08	31.08
HORVU4Hr1G031280.1	Barley	cytosol, plastid	24.16	30.95
HORVU3Hr1G092600.1	Barley	cytosol	22.86	30.66
HORVU3Hr1G092610.1	Barley	cytosol	22.86	30.66
HORVU7Hr1G084210.1	Barley	cytosol	23.64	29.84
HORVU5Hr1G109340.2	Barley	plastid	24.94	29.0
HORVU5Hr1G048040.1	Barley	plastid	21.04	28.32
HORVU3Hr1G022710.1	Barley	mitochondrion	21.82	26.33
HORVU3Hr1G024610.13	Barley	cytosol, plastid	22.34	24.33
HORVU4Hr1G053550.2	Barley	mitochondrion	24.94	24.18
HORVU0Hr1G020490.1	Barley	nucleus	27.53	19.89
HORVU2Hr1G025790.1	Barley	nucleus	25.58	19.33
HORVU3Hr1G018170.3	Barley	cytosol	23.51	13.1

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	UniProt:A0A287N2P5	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:HORVU4Hr1G007110	EnsemblPlants:HORVU4Hr1G007110.17	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B472D4A	SEG:seg

Description

No Description!

Coordinates

chrchr4H:-:18529679..18534417

Molecular Weight (calculated)

87840.8 Da

IEP (calculated)

9.479

GRAVY (calculated)

-0.895

Length

770 amino acids

Sequence
(BLAST)

001: NGPATGRFLL GTCLSANPPP LHASARASSR SAAAAAAAAM KRSFDAMEAK PVFLSKEERQ RLALERRQAA VADQRRSALD VLQSLPRPPP PPPPSSAPRD
101: SSSSSHRDPS DRDRSDRDRD RDRDRDRRRD DDSRRDRDRD RDRDRDRDRD EPSRRDRDRD RDRDREHRDR ERGERDKDRE KDRLEKMAER EREKELEAIK
201: EQYLGSKKPK KRVIKPSEKF RFSFDWENTE DTSRDMNMLY QAPHEARLLY GRGFLAGIDR REQKKAAAVF EKETRAEQRR KFGVEDRPED DVADKKKAAA
301: AEMYDAFDMR VDRHWSEKGI EEMTERDWRI FREDFNISYK GSRIPRPMRN WPESKLGTEL LRAIEKVGYK KPSPIQMAAI PLGLQQRDVI GIAETGSGKT
401: AAFVLPMLSY ITRLPPISED NEAEGPYAVV MAPTRELAQQ IEEETVKFAT YLGIKVVSIV GGQSIEEQGF KIRQGCEVVI ATPGRLLDCL ERRYAVLNQC
501: NYVVLDEADR MIDMGFEPQV VGVLDAMPSS NLKPENEEEE LDEKRIYRTT YMFSATMPPA VERLARKYLR NPVVVTIGTA GKATDLITQN VIMVKESEKM
601: SRLQKILTDL GDKTAIVFCN TKKSADNRAK DLDKAGFRVT ALHGGKSQDQ REISLDGFRN RRFNVLVATD VAGRGIDIPD VAHVINYEMP SSVDTYTHRI
701: GRTGRAGKKG LATSFLTLDN TDIFFDLKQM LTQSNSPVPP ELARHEASKF KPGSVPDRPP RRNDTVYASH

Best Arabidopsis Sequence Match ( AT1G28180.1 )
(BLAST)

001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.