Factsheet for HORVU3Hr1G031710.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G445500.1	Wheat	cytosol	86.97	49.67
HORVU1Hr1G083090.1	Barley	cytosol	45.59	47.41
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	68.97	47.37
HORVU1Hr1G091050.3	Barley	nucleus	86.97	37.96
CDX84672	Canola	cytosol	64.37	37.58
HORVU6Hr1G080730.2	Barley	cytosol	45.98	36.7
TraesCS1A01G415500.1	Wheat	cytosol	89.27	36.18
CDY53786	Canola	nucleus	63.22	27.97
CDY37696	Canola	nucleus	62.84	27.8
Solyc02g068190.1.1	Tomato	cytosol, nucleus	65.9	25.98
Bra021872.1-P	Field mustard	nucleus	65.52	25.95
OQU83862	Sorghum	nucleus	63.6	25.86
PGSC0003DMT400024330	Potato	cytosol	64.75	25.26
PGSC0003DMT400043101	Potato	nucleus	68.2	25.18
VIT_09s0054g01810.t01	Wine grape	cytosol	67.82	24.96
GSMUA_Achr3P01410_001	Banana	nucleus	50.19	24.86
VIT_03s0038g00010.t01	Wine grape	cytosol	67.43	24.72
KRH51212	Soybean	nucleus	66.28	24.68
KRH01937	Soybean	nucleus	66.28	24.5
CDX79541	Canola	nucleus	56.7	23.53
HORVU4Hr1G007110.17	Barley	mitochondrion	69.35	23.51
AT2G33730.1	Thale cress	nucleus	65.52	23.33
Solyc02g081290.2.1	Tomato	nucleus	52.49	20.98
HORVU5Hr1G037290.3	Barley	nucleus	35.63	17.55
HORVU3Hr1G018850.7	Barley	cytosol	36.02	17.18
HORVU4Hr1G031280.1	Barley	cytosol, plastid	39.08	16.97
HORVU7Hr1G084210.1	Barley	cytosol	38.31	16.39
HORVU3Hr1G092610.1	Barley	cytosol	35.63	16.2
HORVU3Hr1G092600.1	Barley	cytosol	35.63	16.2
HORVU5Hr1G048040.1	Barley	plastid	33.72	15.38
HORVU5Hr1G109340.2	Barley	plastid	37.93	14.95
HORVU3Hr1G022710.1	Barley	mitochondrion	34.1	13.95
HORVU4Hr1G053550.2	Barley	mitochondrion	38.31	12.59
HORVU3Hr1G024610.13	Barley	cytosol, plastid	34.1	12.59
HORVU2Hr1G025790.1	Barley	nucleus	36.4	9.32
HORVU0Hr1G020490.1	Barley	nucleus	37.55	9.19
HORVU3Hr1G018170.3	Barley	cytosol	34.48	6.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287KN85	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU3Hr1G031710	EnsemblPlants:HORVU3Hr1G031710.1	InterPro:Helicase_ATP-bd
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF556	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SUPFAM:SSF52540	UniParc:UPI000B47247A	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:158825809..158827655

Molecular Weight (calculated)

28741.2 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.125

Length

261 amino acids

Sequence
(BLAST)

001: MQSWAKSRLG AELLRNVDRV GYRKPTPIQM AAVPLGLQRR DVIGVAQTGS GKTAAFVLPM LAYIAGMPPH TSHSKADEGP YALVLAPTRE LAQQIERETV
101: KLAACLGIRV VSIVGGKADD QSTIQKQASM LERGCEVIVA TPDRLLDCLE SRYAILNRYN YMVLDEADRM IDMGFKPQVV GVLDEMPPSH LKPENADEEL
201: DEARTYMTTH MFSATMPLAM ERLARKYLRN PVAVTVGFAG KAADLVAQNV VMVKCKRRCH G

Best Arabidopsis Sequence Match ( AT1G20920.2 )
(BLAST)

001: MDVDEETKPE NDGDAKMVDL ENETAATVSE SGGDGAVDEE EIDPLDAFMN TMVLPEVEKF CNGAPPPAVN DGTLDSKMNG KESGDRPKKG FNKALGRIIQ
101: GEDSDSDYSE PKNDDDPSLD EDDEEFMKRV KKTKAEKLSL VDHSKIEYEP FRKNFYIEVK DISRMTQEEV NTYRKELELK VHGKDVPRPI KFWHQTGLTS
201: KILDTMKKLN YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGDGPIGLVM APTRELVQQI HSDIRKFSKP LGIRCVPVYG
301: GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PERQTVLFSA TFPRQVETLA RKVLNKPVEI
401: QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWSEKGK ILVFVQSQEK CDALYRDMIK SSYPCLSLHG GKDQTDREST ISDFKNDVCN LLIATSVAAR
501: GLDVKELELV VNFDAPNHYE DYVHRVGRTG RAGRKGCAVT FISEDDAKYA PDLVKALELS EQPVPDDLKA LADGFMVKVK QGIEQAHGTG YGGSGFKFNE
601: EEEEVRKAAK KAQAKEYGFE EDKSDSEDEN DVVRKAGGGE ISQQQATFAQ IAAIAAAAKA AAAAPVSAPV TANQLLANGG GLAAMPGVLP VTVPTLPSEG
701: AGRAAAMVAA MNLQHNLAKI QADAMPEHYE AELEINDFPQ NARWKVTHKE TLGPISEWTG AAITTRGQFY PTGRIPGPGE RKLYLFIEGP SEKSVKHAKA
801: ELKRVLEDIT NQAMSSLPGG ASGRYSVL

Arabidopsis Description

RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.