Factsheet for HORVU3Hr1G018850.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G106000.1	Wheat	cytosol	85.01	93.75
TraesCS3B01G121100.1	Wheat	cytosol	83.55	93.65
TraesCS3A01G103700.1	Wheat	cytosol	84.46	93.15
Os01t0197200-01	Rice	plasma membrane	80.8	89.47
KXG31614	Sorghum	cytosol	79.52	88.41
GSMUA_Achr10P...	Banana	cytosol	74.04	81.49
Zm00001d039452_P002	Maize	cytosol	81.35	80.47
Solyc12g044860.1.1	Tomato	nucleus	70.02	79.96
PGSC0003DMT400083878	Potato	cytosol	72.39	79.04
KRH44155	Soybean	cytosol	72.76	78.5
KRH47127	Soybean	nucleus	72.39	78.11
CDY10596	Canola	nucleus	70.38	77.15
Bra030884.1-P	Field mustard	nucleus	70.2	76.95
CDY02459	Canola	cytosol	70.2	76.95
VIT_09s0002g02100.t01	Wine grape	cytosol	72.21	76.7
KRH48684	Soybean	cytosol, endoplasmic reticulum	64.72	74.37
AT1G55150.2	Thale cress	cytosol	69.84	72.62
HORVU3Hr1G092610.1	Barley	cytosol	57.95	55.23
HORVU3Hr1G092600.1	Barley	cytosol	57.95	55.23
HORVU1Hr1G083090.1	Barley	cytosol	17.92	39.04
HORVU5Hr1G037290.3	Barley	nucleus	35.65	36.79
HORVU3Hr1G031710.1	Barley	mitochondrion	17.18	36.02
HORVU3Hr1G024610.13	Barley	cytosol, plastid	42.96	33.24
HORVU7Hr1G084210.1	Barley	cytosol	34.55	30.98
HORVU5Hr1G048040.1	Barley	plastid	31.26	29.9
HORVU4Hr1G031280.1	Barley	cytosol, plastid	31.63	28.79
HORVU5Hr1G109340.2	Barley	plastid	33.27	27.49
HORVU1Hr1G091050.3	Barley	nucleus	29.98	27.42
HORVU3Hr1G022710.1	Barley	mitochondrion	31.44	26.96
HORVU4Hr1G053550.2	Barley	mitochondrion	38.39	26.45
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	18.28	26.32
HORVU6Hr1G080730.2	Barley	cytosol	14.81	24.77
HORVU4Hr1G007110.17	Barley	mitochondrion	31.08	22.08
HORVU2Hr1G025790.1	Barley	nucleus	36.56	19.63
HORVU0Hr1G020490.1	Barley	nucleus	37.29	19.14
HORVU3Hr1G018170.3	Barley	cytosol	41.68	16.5

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	UniProt:A0A287KBE7	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU3Hr1G018850	EnsemblPlants:HORVU3Hr1G018850.7	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B478673	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:49670494..49674657

Molecular Weight (calculated)

60418.9 Da

IEP (calculated)

8.598

GRAVY (calculated)

-0.176

Length

547 amino acids

Sequence
(BLAST)

001: RAFAPSGRPD AAAAAAAAEL DGLPRFEKNF YVEVPAVAGM TAEEVEAYRR RREITVEGND VPKPVRGFRD VGFPAVQLLP CDLGSNPGNS LLQKCRERLR
101: SKDPKWLGPS LDPAQAAATC TVLPFFLCFL SFIISQPLFP LTYLRSFISF FAEYVLQEIT KAGFTEPTPI QSQGWPMALK GRDLIGIAET GSGKTLAYLL
201: PAIVHVNAQP ILAPGDGPIV LVLAPTRELA VQIQQETTKF GASSKIKSTC IYGGVPKGPQ VRDLQKGVEI IIATPGRLID MMESHHTNLR RVTYLVLDEA
301: DRMLDMGFEP QIKKIVSQIR PDRQTLYWSA TWPKEVELLA RTFLFDPYKV IIGSEELKAN HAICQHVEIL SESQKYNKLV NLLEDIMDGS RILIFMDTKK
401: GCDQITRQLR MDGWPALSIH GDKSQAERDW VLSEFKSGKS PIMTATDVAA RGLDVKDVKY VINYDFPGSL EDYVHRIGRT GRAGATGTAY TFFTAANARF
501: AKDLISILVE AGQKVSPELA NMGRGAPPPS LGYRDRYRGH GGGRSWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.