Factsheet for HORVU6Hr1G080730.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G364300.1	Wheat	nucleus, plastid	91.44	46.07
HORVU3Hr1G031710.1	Barley	mitochondrion	36.7	45.98
TraesCS6B01G364400.1	Wheat	nucleus, plastid	91.13	45.92
GSMUA_Achr3P01410_001	Banana	nucleus	59.02	36.62
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	42.2	36.32
Zm00001d033704_P007	Maize	extracellular	77.68	34.42
CDX84672	Canola	cytosol	46.79	34.23
Zm00001d013453_P001	Maize	nucleus	76.76	34.2
PGSC0003DMT400043101	Potato	nucleus	73.7	34.09
KRH51212	Soybean	nucleus	72.17	33.67
KRH01937	Soybean	nucleus	72.17	33.43
PGSC0003DMT400024330	Potato	cytosol	68.2	33.33
Os03t0708600-02	Rice	nucleus	74.92	33.29
VIT_03s0038g00010.t01	Wine grape	cytosol	72.48	33.29
VIT_09s0054g01810.t01	Wine grape	cytosol	72.17	33.29
HORVU4Hr1G007110.17	Barley	mitochondrion	77.68	32.99
HORVU1Hr1G091050.3	Barley	nucleus	60.24	32.94
Solyc02g068190.1.1	Tomato	cytosol, nucleus	66.67	32.93
AT2G33730.1	Thale cress	nucleus	70.95	31.65
KXG37746	Sorghum	nucleus	77.68	31.44
Solyc02g081290.2.1	Tomato	nucleus	62.69	31.39
CDX79541	Canola	nucleus	60.24	31.32
CDY53786	Canola	nucleus	54.74	30.34
Bra021872.1-P	Field mustard	nucleus	60.86	30.2
CDY37696	Canola	nucleus	51.99	28.81
HORVU1Hr1G083090.1	Barley	cytosol	14.07	18.33
HORVU3Hr1G018850.7	Barley	cytosol	24.77	14.81
HORVU3Hr1G092610.1	Barley	cytosol	25.69	14.63
HORVU3Hr1G092600.1	Barley	cytosol	25.69	14.63
HORVU5Hr1G037290.3	Barley	nucleus	22.63	13.96
HORVU4Hr1G031280.1	Barley	cytosol, plastid	25.08	13.64
HORVU7Hr1G084210.1	Barley	cytosol	23.85	12.79
HORVU5Hr1G109340.2	Barley	plastid	25.08	12.39
HORVU5Hr1G048040.1	Barley	plastid	20.8	11.89
HORVU3Hr1G022710.1	Barley	mitochondrion	21.41	10.97
HORVU4Hr1G053550.2	Barley	mitochondrion	26.61	10.96
HORVU3Hr1G024610.13	Barley	cytosol, plastid	21.41	9.9
HORVU2Hr1G025790.1	Barley	nucleus	27.83	8.93
HORVU0Hr1G020490.1	Barley	nucleus	27.83	8.54
HORVU3Hr1G018170.3	Barley	cytosol	22.63	5.35

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287UVZ1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU6Hr1G080730	EnsemblPlants:HORVU6Hr1G080730.2	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000B4721D5	:

Description

No Description!

Coordinates

chrchr6H:+:542571951..542583452

Molecular Weight (calculated)

36953.3 Da

IEP (calculated)

8.566

GRAVY (calculated)

-0.550

Length

327 amino acids

Sequence
(BLAST)

001: KIREQYLGSN STKTRTVSMK PSAKFPFSFD WEKNTEDTSC DTNALHQSPL LLYGRGFLAG IDRRQQKEEA AQKENRVELR RDTSPEESTK KKAEMRDSFG
101: MRVDRHWSDK AAEEMTERDW RIFREDFNIS YKGSRLPRPM RHWKESKLGT RLLRAIDKVG YKKPSPIQMA TIPLGLQQRD VIGVAETGSG KTAAFVLPML
201: SYISRLPPIK DDEAAEGPYA LVMAPTHVVV EEKIDQEASK LSTYLGIKVV SIVGGQSIEE QGFKVRQGCE VVIATPGRLL DCVEKRYIVL NQCNYVVLDE
301: ADRMIDMGFE SQVAGVLDAM PSSNLKP

Best Arabidopsis Sequence Match ( AT1G20920.2 )
(BLAST)

001: MDVDEETKPE NDGDAKMVDL ENETAATVSE SGGDGAVDEE EIDPLDAFMN TMVLPEVEKF CNGAPPPAVN DGTLDSKMNG KESGDRPKKG FNKALGRIIQ
101: GEDSDSDYSE PKNDDDPSLD EDDEEFMKRV KKTKAEKLSL VDHSKIEYEP FRKNFYIEVK DISRMTQEEV NTYRKELELK VHGKDVPRPI KFWHQTGLTS
201: KILDTMKKLN YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGDGPIGLVM APTRELVQQI HSDIRKFSKP LGIRCVPVYG
301: GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PERQTVLFSA TFPRQVETLA RKVLNKPVEI
401: QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWSEKGK ILVFVQSQEK CDALYRDMIK SSYPCLSLHG GKDQTDREST ISDFKNDVCN LLIATSVAAR
501: GLDVKELELV VNFDAPNHYE DYVHRVGRTG RAGRKGCAVT FISEDDAKYA PDLVKALELS EQPVPDDLKA LADGFMVKVK QGIEQAHGTG YGGSGFKFNE
601: EEEEVRKAAK KAQAKEYGFE EDKSDSEDEN DVVRKAGGGE ISQQQATFAQ IAAIAAAAKA AAAAPVSAPV TANQLLANGG GLAAMPGVLP VTVPTLPSEG
701: AGRAAAMVAA MNLQHNLAKI QADAMPEHYE AELEINDFPQ NARWKVTHKE TLGPISEWTG AAITTRGQFY PTGRIPGPGE RKLYLFIEGP SEKSVKHAKA
801: ELKRVLEDIT NQAMSSLPGG ASGRYSVL

Arabidopsis Description

RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.