Factsheet for Solyc02g068190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024330	Potato	cytosol	93.96	92.97
CDX84672	Canola	cytosol	52.11	77.18
Solyc02g081290.2.1	Tomato	nucleus	74.92	75.96
VIT_09s0054g01810.t01	Wine grape	cytosol	79.61	74.33
VIT_03s0038g00010.t01	Wine grape	cytosol	79.61	74.02
KRH51212	Soybean	nucleus	76.89	72.61
KRH01937	Soybean	nucleus	76.74	71.95
GSMUA_Achr3P01410_001	Banana	nucleus	56.8	71.35
Bra021872.1-P	Field mustard	nucleus	68.58	68.89
CDY53786	Canola	nucleus	61.18	68.64
CDX79541	Canola	nucleus	63.9	67.25
TraesCS1B01G445500.1	Wheat	cytosol	46.37	67.18
CDY37696	Canola	nucleus	59.82	67.12
HORVU6Hr1G080730.2	Barley	cytosol	32.93	66.67
AT2G33730.1	Thale cress	nucleus	73.26	66.17
HORVU3Hr1G031710.1	Barley	mitochondrion	25.98	65.9
TraesCS4A01G270200.1	Wheat	nucleus	72.05	65.61
Zm00001d033704_P007	Maize	extracellular	72.96	65.45
TraesCS4B01G043900.1	Wheat	nucleus	72.05	65.43
Zm00001d013453_P001	Maize	nucleus	72.51	65.4
Os03t0708600-02	Rice	nucleus	71.3	64.13
TraesCS6B01G364400.1	Wheat	nucleus, plastid	62.69	63.94
TraesCS6B01G364300.1	Wheat	nucleus, plastid	62.54	63.79
HORVU1Hr1G083090.1	Barley	cytosol	23.87	62.95
HORVU4Hr1G007110.17	Barley	mitochondrion	72.21	62.08
TraesCS5B01G079300.1	Wheat	nucleus	66.77	61.47
TraesCS1A01G415500.1	Wheat	cytosol	58.91	60.56
KXG37746	Sorghum	nucleus	73.26	60.02
TraesCS4D01G041400.1	Wheat	nucleus	72.05	59.55
HORVU1Hr1G091050.3	Barley	nucleus	53.47	59.2
OQU83862	Sorghum	nucleus	56.65	58.41
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	30.21	52.63
Solyc12g044860.1.1	Tomato	nucleus	24.32	33.61
Solyc09g015930.2.1	Tomato	plastid	25.23	29.93
Solyc01g005960.2.1	Tomato	plastid	26.89	29.47
Solyc03g052980.2.1	Tomato	nucleus	27.19	29.41
Solyc08g076200.2.1	Tomato	nucleus	24.47	29.29
Solyc06g068280.2.1	Tomato	extracellular, nucleus	25.83	28.74
Solyc03g117440.2.1	Tomato	cytosol, nucleus	25.68	28.57
Solyc03g112350.2.1	Tomato	nucleus	26.59	27.04
Solyc12g035130.1.1	Tomato	nucleus	24.17	26.14
Solyc02g086660.2.1	Tomato	nucleus	26.89	25.21
Solyc01g079330.2.1	Tomato	nucleus	26.89	23.0
Solyc12g098700.1.1	Tomato	nucleus	27.79	16.04
Solyc01g057760.2.1	Tomato	nucleus	24.92	13.51

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000375	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005682	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4B7F1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g068190.1	EnsemblPlants:Solyc02g068190.1.1
UniParc:UPI000276791B	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:38208856..38210844

Molecular Weight (calculated)

75673.7 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.690

Length

662 amino acids

Sequence
(BLAST)

001: MNRPVGIKLD PSKKPVYLTK SQREQLALHD EIADRKRCHE HLQVKYNRPS SDNHCSEKNR KRERDRNGDR DREKELNRVR LENPAEKELE AIHEQYLRSK
101: KPKKRVITSC AKLRSSFGWE NSEDTSRDVN PLYQNPHEAR PHFGRGFFGG IDRREQKKLA IKNERKIQEE IWKKGGVEAT AVEAAALKKK EQNADLYDTF
201: DMRVDRHWTD KKLEEMTERD WRIFREDYNI SYKGSRIPRP MRNWAESALT TELLKAVERA GYRKPSPIQM ASIPLGLQLR DVIGVAETGS GKTAAFVLPL
301: LNYITRLPPL SEENEAEGPY AVVMAPTREL AQQIEDETVK FAHYLGIKVV SIVGGQSIEE QGFRIRQGCE VVIATPGRLL DCLERRYCVL NQCNYVVLDE
401: ADRMIDMGFG PQVVGVLDAM PSSNMKPKNE DEKLDENKIY RTTYMFSATM PPAVERLARN YLRNPAVVTI GTAGKVTDLI TQHVFMVKES EKMFKLQRFL
501: DELGDKTAIV FINSRKRVNT VAKHLDKAGY RVTTLHGGKS QEQREISLEG FRTKKYNVLV ASDVAGRGID IPDVAHVINY DMTNKLEAYT HRIGRTGRAG
601: KTGVATTFLT LQDTEVFYDL KQMLIQSDSP VPPELARHEA SKLKPGSIPG RPPRRNDIVF TH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.