Factsheet for Solyc02g086660.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001391	Potato	cytosol	94.19	91.1
Solyc12g035130.1.1	Tomato	nucleus	66.29	76.47
Bra040699.1-P	Field mustard	cytosol	59.35	68.8
AT3G01540.2	Thale cress	cytosol	59.77	68.17
Bra001004.1-P	Field mustard	cytosol	60.48	67.14
Bra023478.1-P	Field mustard	cytosol	61.47	64.2
CDY28671	Canola	cytosol	59.35	63.2
CDX91036	Canola	cytosol	60.76	62.72
CDX91943	Canola	cytosol	59.07	62.71
AT5G14610.1	Thale cress	cytosol	62.04	61.52
CDX74304	Canola	cytosol	59.35	60.9
KRH56577	Soybean	nucleus	65.58	59.74
KRG93254	Soybean	endoplasmic reticulum	65.44	59.54
TraesCS3A01G130200.4	Wheat	cytosol	54.39	59.08
TraesCS3B01G149300.8	Wheat	cytosol	54.39	59.08
TraesCS3D01G131100.11	Wheat	cytosol	54.39	58.81
VIT_14s0066g01020.t01	Wine grape	cytosol	70.4	57.59
CDX85591	Canola	cytosol	61.33	57.58
Zm00001d008725_P003	Maize	cytosol	56.09	57.14
Zm00001d039673_P002	Maize	cytosol	54.96	55.35
HORVU3Hr1G024610.13	Barley	cytosol, plastid	55.1	55.02
OQU86230	Sorghum	cytosol	55.67	54.97
GSMUA_Achr8P31890_001	Banana	nucleus	58.92	52.93
Os01t0172200-01	Rice	cytosol	56.23	52.31
Os01t0549400-01	Rice	nucleus	57.22	51.01
KXG32714	Sorghum	nucleus	57.08	50.95
Zm00001d011155_P012	Maize	nucleus	56.23	50.7
Zm00001d044510_P002	Maize	mitochondrion	56.94	50.12
TraesCS3D01G202500.3	Wheat	nucleus	55.38	48.33
TraesCS3A01G194200.1	Wheat	nucleus	53.54	48.28
Solyc12g044860.1.1	Tomato	nucleus	32.72	48.23
TraesCS3B01G230800.1	Wheat	nucleus	53.4	48.03
Solyc03g112350.2.1	Tomato	nucleus	34.7	37.63
Solyc01g005960.2.1	Tomato	plastid	30.03	35.1
Solyc03g052980.2.1	Tomato	nucleus	29.6	34.15
Solyc08g076200.2.1	Tomato	nucleus	26.35	33.63
Solyc01g057760.2.1	Tomato	nucleus	56.23	32.51
Solyc09g015930.2.1	Tomato	plastid	24.22	30.65
Solyc06g068280.2.1	Tomato	extracellular, nucleus	23.8	28.24
Solyc03g117440.2.1	Tomato	cytosol, nucleus	23.51	27.9
Solyc02g068190.1.1	Tomato	cytosol, nucleus	25.21	26.89
Solyc01g079330.2.1	Tomato	nucleus	28.75	26.23
Solyc02g081290.2.1	Tomato	nucleus	22.8	24.66
Solyc12g098700.1.1	Tomato	nucleus	27.2	16.74

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:K4BBH4	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00397
ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487
SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc02g086660.2	EnsemblPlants:Solyc02g086660.2.1	UniParc:UPI0002767B4B
InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:-:49307052..49317070

Molecular Weight (calculated)

77155.2 Da

IEP (calculated)

9.711

GRAVY (calculated)

-0.718

Length

706 amino acids

Sequence
(BLAST)

001: MAATATASST GPRYAPEDPT LPKPWKGLVD GKTGYLYFWN PETNTTQYEK PVATPHVGAA QHKSSVSVSS SVERPSQSQC SDHGDNRGTN GALSKLSSGE
101: GIQTARANEL SRDETSAPKG YSASAAASDI SPDAYRRQHE ISVSGGDVPP PFTSFEATGF PSEILREIHQ AGFPAPSPIQ AQSWPIALQG RDIVAVAKTG
201: SGKTLGFLLP GFILLKQRRS NPQSGPTILV LSPTRELATQ IQDEAVKFGR SSKISCTCLY GGAPKGPQLR DLDRGVDIVV ATPGRLNDIL EMRRVRLDQV
301: SYLVLDEADR MLDMGFEPQI RKIVKEVPTR RQTLMYTATW PKEVRRIAAD LLVNPVQVNI GNVDELVANK SITQYIEVLS YMDKQKRLDQ ILRSQEPGSK
401: IIIFCSTKKM CDQLARNLTH PFGAAAIHGD KSQGERDHVL SQFRTGKSPV LVATDVAARG LDVKDIRVVV NYDFPTGIED YVHRIGRTGR AGATGEAYTF
501: FVDQDAKHAS DLIKVLEGAN QQVPTELRDM ASRGGGMGRA RRQWDSGSGG REGGHGGRYD AGYGGRDGAR GGWEAPSSER SGRVYDSDSR DRDRHGHGSD
601: APASFHGRSF HETMMQGSQR RDRSRSRSPN RGSGWGDRKG RERSRSRSAE RSERTRIQVP VGGSFHEAMM GFTRSSAGDS RKDWEKERSQ GDGKSGDGPR
701: ANNWEE

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.