Factsheet for Solyc03g052980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002828	Potato	cytosol	98.86	97.9
CDY47978	Canola	plastid	56.21	82.3
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	80.23	78.94
Solyc01g005960.2.1	Tomato	plastid	77.12	78.15
CDY06034	Canola	cytosol	70.59	75.13
Bra016869.1-P	Field mustard	cytosol, plastid	74.51	74.88
CDY14843	Canola	cytosol, plastid	74.84	74.84
CDX71948	Canola	cytosol	72.71	74.54
CDX98304	Canola	cytosol, plastid	56.05	74.4
KRH38030	Soybean	endoplasmic reticulum	73.69	73.81
CDX98301	Canola	cytosol	71.9	73.21
Bra007399.1-P	Field mustard	cytosol	73.04	73.16
KRH71800	Soybean	plastid	72.88	73.0
AT2G42520.2	Thale cress	nucleus, plastid	75.49	72.99
CDX67749	Canola	cytosol	71.73	72.92
Bra003341.1-P	Field mustard	cytosol	72.55	72.79
AT3G58510.2	Thale cress	cytosol	72.39	72.39
Os11t0599500-00	Rice	nucleus, plasma membrane	73.37	72.07
TraesCS4D01G148700.1	Wheat	golgi	69.61	70.88
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.61	70.88
Zm00001d048924_P001	Maize	plasma membrane	69.93	70.39
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.12	70.38
CDX67752	Canola	cytosol	72.71	70.3
CDY49232	Canola	cytosol	70.75	69.28
Bra003343.1-P	Field mustard	cytosol	72.55	69.05
AT3G58570.1	Thale cress	cytosol	72.88	69.04
KXG28851	Sorghum	cytosol, plastid	70.26	68.8
CDX71944	Canola	cytosol	71.08	68.61
Bra007402.1-P	Field mustard	cytosol	70.92	67.6
TraesCS4A01G141400.1	Wheat	plastid	69.44	64.79
Bra014568.1-P	Field mustard	cytosol	57.35	52.7
CDX88990	Canola	cytosol, plastid	43.95	48.21
CDY00570	Canola	nucleus	37.58	37.89
Solyc12g044860.1.1	Tomato	nucleus	29.25	37.37
Solyc09g015930.2.1	Tomato	plastid	32.19	35.3
Solyc12g035130.1.1	Tomato	nucleus	32.52	32.52
Solyc08g076200.2.1	Tomato	nucleus	28.43	31.46
Solyc03g112350.2.1	Tomato	nucleus	32.52	30.57
Solyc03g117440.2.1	Tomato	cytosol, nucleus	29.25	30.08
Solyc02g086660.2.1	Tomato	nucleus	34.15	29.6
Solyc06g068280.2.1	Tomato	extracellular, nucleus	28.76	29.58
Solyc02g068190.1.1	Tomato	cytosol, nucleus	29.41	27.19
Solyc02g081290.2.1	Tomato	nucleus	28.1	26.34
Solyc01g079330.2.1	Tomato	nucleus	32.19	25.45
Solyc01g057760.2.1	Tomato	nucleus	33.66	16.87
Solyc12g098700.1.1	Tomato	nucleus	31.37	16.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4BGK0	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g052980.2	EnsemblPlants:Solyc03g052980.2.1
UniParc:UPI0002768919	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:21381570..21388890

Molecular Weight (calculated)

66417.2 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.492

Length

612 amino acids

Sequence
(BLAST)

001: MRNSWADSVE NVATDNGGPS GASGASASTR RSSYVPPHLR NRPMTAEPLA PSHGGPPSGN DRSGFNGPTS GPRWGGSRPD YGRQGGYGGG GRGGGWGGRG
101: GGWGREREVN PFGNDADVDL EQSFDQENTG INFDAYEDIP VETSGENVPP PVNTFAEIDL GEAVNLNIRR CKYVKPTPVQ RYAIPISLAG RDLMACAQTG
201: SGKTAAFCFP IISGIMRGHF PQRPHGSRTV FPLALILSPT RELSMQIHEE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVDILVATPG RLVDLLERAK
301: VSLQMIRYLA LDEADRMLDM GFEPQIRRIV QQMDMPPPGE RQTMLFSATF PKEIQRLASD FLANYIFLAV GRVGSSTDLI VQRVEFVHDV DKRSHLMDLL
401: HAQMANGVHG KHSLTLVFVE TKKGADALEH WLCINGFPAT AIHGDRTQQE REQALRTFKR GDTPILVATD VAARGLDIPH VSHVINFDLP NDIDDYVHRI
501: GRTGRAGKTG LATAFFNDGN LSMAKPLADL MQEANQDVPE WLTRYASRSS FGGGRNRRAG GGRFGGRDFR RDSSYNRSGG GGGMNYYDGG NSSGGYGNYS
601: GGYGPGVTSA WD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.