CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048924_P001	Maize	plasma membrane	90.4	92.93
TraesCS4D01G148700.1	Wheat	golgi	81.12	84.36
TraesCS4B01G126000.1	Wheat	cytosol, plastid	81.12	84.36
HORVU4Hr1G031280.1	Barley	cytosol, plastid	81.12	84.36
Os11t0599500-00	Rice	nucleus, plasma membrane	84.0	84.27
CDY47978	Canola	plastid	53.6	80.14
TraesCS4A01G141400.1	Wheat	plastid	81.44	77.59
KRH58901	Soybean	nucleus	72.8	74.1
KRG97325	Soybean	endoplasmic reticulum	69.6	73.6
VIT_13s0156g00070.t01	Wine grape	cytosol	72.64	73.58
KRH42811	Soybean	endoplasmic reticulum	72.8	73.51
KRH31589	Soybean	nucleus	70.24	72.68
PGSC0003DMT400010921	Potato	cytosol	69.28	71.93
CDX98304	Canola	cytosol, plastid	52.96	71.8
CDY06034	Canola	cytosol	65.12	70.78
PGSC0003DMT400081851	Potato	cytosol	68.16	70.53
Solyc01g005960.2.1	Tomato	plastid	68.0	70.36
Solyc03g052980.2.1	Tomato	nucleus	68.8	70.26
KRH38030	Soybean	endoplasmic reticulum	68.48	70.05
CDX71948	Canola	cytosol	66.72	69.85
Bra016869.1-P	Field mustard	cytosol, plastid	67.68	69.46
PGSC0003DMT400002828	Potato	cytosol	68.64	69.42
CDY14843	Canola	cytosol, plastid	67.84	69.28
AT3G58510.2	Thale cress	cytosol	67.84	69.28
KRH71800	Soybean	plastid	67.52	69.07
CDX67749	Canola	cytosol	66.24	68.77
Bra007399.1-P	Field mustard	cytosol	66.88	68.41
CDX98301	Canola	cytosol	65.76	68.39
KXG37329	Sorghum	cytosol, plastid	69.44	68.35
Bra003341.1-P	Field mustard	cytosol	66.24	67.87
AT2G42520.2	Thale cress	nucleus, plastid	68.0	67.14
KXG34634	Sorghum	plastid	68.8	66.56
CDY49232	Canola	cytosol	65.92	65.92
CDX67752	Canola	cytosol	66.08	65.24
CDX71944	Canola	cytosol	65.92	64.98
Bra007402.1-P	Field mustard	cytosol	66.08	64.33
Bra003343.1-P	Field mustard	cytosol	66.08	64.23
AT3G58570.1	Thale cress	cytosol	66.24	64.09
OQU76674	Sorghum	cytosol	49.44	54.5
Bra014568.1-P	Field mustard	cytosol	54.56	51.2
CDX88990	Canola	cytosol, plastid	42.72	47.85
KXG31614	Sorghum	cytosol	28.8	36.59
CDY00570	Canola	nucleus	34.88	35.91
EER96257	Sorghum	cytosol	27.36	33.4
EES04084	Sorghum	cytosol	30.4	32.87
OQU86230	Sorghum	cytosol	32.0	27.97
OQU83862	Sorghum	nucleus	28.48	27.73
EER92293	Sorghum	cytosol	27.04	27.35
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.36	25.59
KXG32714	Sorghum	nucleus	32.0	25.28
KXG37746	Sorghum	nucleus	29.92	23.14
OQU79814	Sorghum	nucleus	29.44	18.64
EES14596	Sorghum	nucleus	29.76	17.51
OQU84042	Sorghum	cytosol	35.04	15.78

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6PT78	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG28851	ProteinID:KXG28851	ProteinID:KXG28851.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3005G175100	SUPFAM:SSF52540
UniParc:UPI00081AB525	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:65515595..65520352

Molecular Weight (calculated)

66165.6 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.409

Length

625 amino acids

Sequence
(BLAST)

001: MASSRTSWAD VADAEPAPPP PVTAPAPAAA SNGPAPRSSY VPPHLRNRPA SSTPAASAPP PRSTAGLLSR PGAGSSFGAS ATGGSFGAGR SRGGRSWDRE
101: PDPFADSDPA PAPSSATDGT PFEEHQNTGI NFDAYEDIPV ETSGREVPAP VSTFAEIDLG EALNDNIRRC KYVRPTPVQR HAIPISLAGR DLMACAQTGS
201: GKTAAFCFPI ISGIMKGPPS AGGGRQRGGG MGMRTAYPSA LILSPTRELS MQIHEEARKF SYQTGVRVVV AYGGAPITQQ LRELERGVDI LVATPGRLVD
301: LLERARVSLQ SIRYLALDEA DRMLDMGFEP QVRRIVEQMD MPLPGVRQTM LFSATFPKEI QKMASDFLDN YIFLAVGRVG SSTDLIAQRV EFVQEADKRS
401: HLMDLLHAQR DTGKPTLTLV FVETKRGADS LESWLCMNGF PATSIHGDRN QQEREYALRS FKSGQTPILV ATDVAARGLD IPLVAHVVNF DLPNDIDDYV
501: HRIGRTGRAG KSGLATAFFN DNNSSLARSL ADLMQESNQE VPAWLLRYAA RPSYGGGGGG RNRRSGGGSR FGGRDFRNDS SSFGKGGSRG GGDYYGGGSS
601: GGYGGGSSYG GGGYGGGAGA PSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.