Factsheet for Bra014568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88990	Canola	cytosol, plastid	83.33	99.46
CDY00570	Canola	nucleus	70.72	77.59
Bra003341.1-P	Field mustard	cytosol	57.66	62.95
AT3G58510.2	Thale cress	cytosol	57.06	62.09
Bra007399.1-P	Field mustard	cytosol	56.91	62.03
Bra016869.1-P	Field mustard	cytosol, plastid	55.71	60.92
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	54.65	58.52
Solyc03g052980.2.1	Tomato	nucleus	52.7	57.35
PGSC0003DMT400002828	Potato	cytosol	52.7	56.8
Bra003343.1-P	Field mustard	cytosol	54.8	56.77
TraesCS4B01G126000.1	Wheat	cytosol, plastid	51.2	56.74
KRH38030	Soybean	endoplasmic reticulum	51.95	56.63
TraesCS4D01G148700.1	Wheat	golgi	51.05	56.57
HORVU4Hr1G031280.1	Barley	cytosol, plastid	50.9	56.41
Bra007402.1-P	Field mustard	cytosol	53.9	55.92
Zm00001d048924_P001	Maize	plasma membrane	50.9	55.76
KRH71800	Soybean	plastid	51.05	55.65
Os11t0599500-00	Rice	nucleus, plasma membrane	51.95	55.54
KXG28851	Sorghum	cytosol, plastid	51.2	54.56
TraesCS4A01G141400.1	Wheat	plastid	51.05	51.83
Bra030884.1-P	Field mustard	nucleus	25.08	33.47
Bra035857.1-P	Field mustard	cytosol	27.18	30.63
Bra035518.1-P	Field mustard	nucleus	23.87	29.66
Bra023227.1-P	Field mustard	nucleus	24.02	29.47
Bra040699.1-P	Field mustard	cytosol	26.28	28.74
Bra001004.1-P	Field mustard	cytosol	26.28	27.52
Bra000447.1-P	Field mustard	cytosol	27.18	26.89
Bra023478.1-P	Field mustard	cytosol	27.03	26.63
Bra003568.1-P	Field mustard	cytosol	23.42	26.4
Bra018133.1-P	Field mustard	cytosol	23.12	26.19
Bra008471.1-P	Field mustard	cytosol	22.07	26.11
Bra035177.1-P	Field mustard	cytosol	22.97	26.02
Bra004464.1-P	Field mustard	cytosol	27.63	25.14
Bra021872.1-P	Field mustard	nucleus	23.12	23.37
Bra029779.1-P	Field mustard	nucleus	25.83	19.39
Bra001200.1-P	Field mustard	cytosol	26.88	17.02
Bra025856.1-P	Field mustard	nucleus	26.73	15.2

Protein Annotations

Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra014568	EnsemblPlants:Bra014568.1	EnsemblPlants:Bra014568.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001611	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4DDK0
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF13516	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00367	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52047	SUPFAM:SSF52540	UniParc:UPI00025441CA	SEG:seg	:

Description

AT3G58510 (E=6e-206) | DEAD box RNA helicase, putative (RH11)

Coordinates

chrA04:-:1492764..1496745

Molecular Weight (calculated)

74297.0 Da

IEP (calculated)

5.109

GRAVY (calculated)

-0.176

Length

666 amino acids

Sequence
(BLAST)

001: MSASWADAAD SDREVNPFGD DADQENTSID FDDYEDTPIE TSGEDVPPPV HAFADIELGE ALNLNIKRCK YVTPTPVQRH AIPILLAERD LMACAQTGSG
101: KTAAFCFPII RGIMRDLHGE RPPGSRTLYP LALILSPSRE LASQIHDKAK KFSYQTGVKV VVAYGGTPID QQLMELEKGV DILVATPGRL NDLLERATVS
201: MQMIKFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPR EIQRLASDFL SNYIFLAVGR VGSSTDSITL KVEYVHDSDK RSHLMALLHA
301: QRENGTEQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREEA LKSFKSGRTP IMVATDVAAR GLDIPHVAHV VNFDLPNDID EFVHRIVRTW
401: REGESGVATT FFNENNASLA RELAEVMQEA DQKPRFRQVK HINLDFSQGI EDSHLQLVKS QCQDVLLSLE CLNLNGHLVK HCRNIIDLNL SGCKSITDKG
501: MQLVAESYQD LESLNITRCV KITDDGLLHV LHKCSTLLTL NFYALSGQSL QEADLRFLDL CGAQNLSDEG LTHMAKCIKL ESLNLTWCVR ITDSGVITIA
601: NSCTSLEFLS LFGIIGVTDR CLETLSQTCS ATLTTLDVNG CIGIKRRSRE ELLQMFPRLT CFKVHS

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.