Factsheet for TraesCS4A01G141400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G148700.1	Wheat	golgi	90.7	99.0
TraesCS4B01G126000.1	Wheat	cytosol, plastid	90.7	99.0
HORVU4Hr1G031280.1	Barley	cytosol, plastid	90.09	98.34
Os11t0599500-00	Rice	nucleus, plasma membrane	78.96	83.15
Zm00001d048924_P001	Maize	plasma membrane	76.52	82.57
KXG28851	Sorghum	cytosol, plastid	77.59	81.44
CDY47978	Canola	plastid	50.76	79.67
KRG97325	Soybean	endoplasmic reticulum	66.16	73.43
KRH58901	Soybean	nucleus	68.29	72.96
KRH31589	Soybean	nucleus	66.92	72.68
KRH42811	Soybean	endoplasmic reticulum	68.45	72.54
VIT_13s0156g00070.t01	Wine grape	cytosol	68.14	72.45
CDX98304	Canola	cytosol, plastid	50.15	71.37
CDY06034	Canola	cytosol	62.5	71.3
PGSC0003DMT400010921	Potato	cytosol	64.94	70.76
CDX71948	Canola	cytosol	63.72	70.02
CDX67749	Canola	cytosol	63.87	69.6
KRH38030	Soybean	endoplasmic reticulum	64.79	69.56
CDX98301	Canola	cytosol	63.72	69.55
AT3G58510.2	Thale cress	cytosol	64.79	69.44
Solyc03g052980.2.1	Tomato	nucleus	64.79	69.44
PGSC0003DMT400081851	Potato	cytosol	63.87	69.37
Solyc01g005960.2.1	Tomato	plastid	63.87	69.37
Bra016869.1-P	Field mustard	cytosol, plastid	64.33	69.29
CDY14843	Canola	cytosol, plastid	64.63	69.28
KRH71800	Soybean	plastid	64.48	69.23
PGSC0003DMT400002828	Potato	cytosol	64.79	68.77
Bra003341.1-P	Field mustard	cytosol	63.87	68.69
Bra007399.1-P	Field mustard	cytosol	63.87	68.58
TraesCS5A01G454600.1	Wheat	golgi	66.31	68.4
AT2G42520.2	Thale cress	nucleus, plastid	64.94	67.3
CDX67752	Canola	cytosol	63.26	65.56
CDY49232	Canola	cytosol	62.35	65.44
CDX71944	Canola	cytosol	62.8	64.98
Bra003343.1-P	Field mustard	cytosol	63.11	64.39
Bra007402.1-P	Field mustard	cytosol	62.65	64.02
AT3G58570.1	Thale cress	cytosol	62.96	63.93
Bra014568.1-P	Field mustard	cytosol	51.83	51.05
CDX88990	Canola	cytosol, plastid	40.4	47.49
TraesCS7A01G374000.1	Wheat	nucleus	46.34	43.0
TraesCS3A01G103700.1	Wheat	cytosol	26.68	35.28
CDY00570	Canola	nucleus	32.47	35.09
TraesCS3A01G416900.1	Wheat	cytosol	28.35	32.4
TraesCS5A01G114400.1	Wheat	nucleus	25.0	30.65
TraesCS3A01G130200.4	Wheat	cytosol	29.57	29.85
TraesCS5A01G153700.1	Wheat	cytosol	24.7	27.79
TraesCS1A01G415500.1	Wheat	cytosol	26.98	27.48
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	26.07	25.99
TraesCS4A01G121700.1	Wheat	mitochondrion	30.18	25.81
TraesCS4A01G270200.1	Wheat	nucleus	28.51	25.72
TraesCS3A01G194200.1	Wheat	nucleus	28.35	23.75
TraesCS7A01G298800.3	Wheat	nucleus	27.44	16.79
TraesCS3A01G100200.1	Wheat	cytosol	31.71	15.59

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4A01G141400	EnsemblPlants:TraesCS4A01G141400.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr4A:-:220019871..220026302

Molecular Weight (calculated)

70915.8 Da

IEP (calculated)

9.266

GRAVY (calculated)

-0.487

Length

656 amino acids

Sequence
(BLAST)

001: MEWTCSLGFP SRTLRFSRKL HPTTTDRNTA ESRSLKKKQC PPRLLPPPPP RRSHLTMAAP SRTSWADVAD AEPAPPAPVP AAAPATSNGP ARADRSSYVP
101: PHLRNRSSNA PPVSSAPPPR AAPGLLGRPT GGVGGRFGGG GAPPRRWDRE PNPFGDEEEV PAEPVPFDEH QNTGINFEAY EDIPVETSGR EVPPAVGTFA
201: EIDLGAALND NIRRCKYVRP TPVQRHAIPI SLAGRDLMAC AQTGSGKTAA FCFPIISGIM RGPPMQRSQR GGSRTACPLA LILSPTRELS MQIHEEARKF
301: SYQTGVRVVV AYGGAPITQQ LRDLERGVDI LVATPGRLVD LLERARVSLQ SIRYLALDEA DRMLDMGFEP QVRRIVEQMD MPPRGVRQTL LFSATFPGEI
401: QRMASDFLEN YIFLAVGRVG SSTELIAQRV EFVQEADKRS HLMDLLHAQR DSSEQGKQAL TLVFVETKRG ADSLENWLCT NGFPATSIHG DRNQQEREYA
501: LRSFKSGQTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG RAGKSGIATA FFNDNNSSMA KSLADLMQES NQEVPAWLTR YAARPSYGGG
601: GGRNRRGAGG GSRFGGRDFR RESSSFGKGG GASDYAGGSS YGGGGYGGAG APSAWD

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.