Factsheet for TraesCS5A01G454600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G465100.1	Wheat	cytosol	99.53	99.53
TraesCS5B01G464500.2	Wheat	cytosol	99.06	99.37
HORVU5Hr1G109340.2	Barley	plastid	97.8	93.96
Os03t0805200-01	Rice	plastid	87.42	87.28
KXG37329	Sorghum	cytosol, plastid	84.43	84.57
GSMUA_Achr8P15350_001	Banana	plastid	68.87	73.86
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	68.71	72.11
GSMUA_Achr6P29700_001	Banana	plastid	65.41	71.97
TraesCS4A01G141400.1	Wheat	plastid	68.4	66.31
GSMUA_Achr9P25390_001	Banana	mitochondrion	44.5	63.17
GSMUA_Achr4P17320_001	Banana	plastid	50.63	63.14
TraesCS7A01G374000.1	Wheat	nucleus	51.26	46.11
TraesCS3A01G103700.1	Wheat	cytosol	29.4	37.7
TraesCS3A01G416900.1	Wheat	cytosol	30.35	33.62
TraesCS5A01G114400.1	Wheat	nucleus	26.57	31.59
TraesCS3A01G130200.4	Wheat	cytosol	30.5	29.85
TraesCS1A01G415500.1	Wheat	cytosol	28.46	28.11
TraesCS5A01G153700.1	Wheat	cytosol	25.31	27.62
TraesCS4A01G270200.1	Wheat	nucleus	30.19	26.41
TraesCS4A01G121700.1	Wheat	mitochondrion	31.29	25.95
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	26.42	25.53
TraesCS3A01G194200.1	Wheat	nucleus	30.66	24.9
TraesCS7A01G298800.3	Wheat	nucleus	30.35	18.0
TraesCS3A01G100200.1	Wheat	cytosol	34.28	16.34

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5A01G454600	EnsemblPlants:TraesCS5A01G454600.1	TIGR:cd00079	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr5A:-:635504738..635508435

Molecular Weight (calculated)

67193.0 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.388

Length

636 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATG AAPAPVANHQ NSRPTRSSYV PPHLRGGGRS PENQVPAAAP TPAGAYPSGA VQPSGGYAAA VGGTRWAAPP GAGSAGVGVV
101: RQGGGGRGAV GGAGGGWNSR PGGWGDRRDR EPNPFGDSEP AAVDVDFESQ QNTGINFDAY EDIPVETSGH DVPPAVNTFA EIDLGDALNE NIRRCKYVRP
201: TPVQRHAIPI VIGGRDLMAC AQTGSGKTAA FCFPIISGIL KSRPPQRPRA RTAFPLALIL SPTRELSVQI HEEAKKFAYQ TGVKACVAYG GAPIHQQLRE
301: LERGVDILVA TPGRLMDLLE RARVSLQMVN YLALDEADRM LDMGFEPQIR KIVEQMDMPP RGVRQTMLFS ATFPKEIQRL ASDFLADYIF LAVGRVGSST
401: DLIAQRVEFV LEADKRSYLM DLIHAQKAND VPGKNSLTLV FVETKRGADA LENWLYTNGF PATSIHGDRT QQEREYALRS FKSGATPILV ATDVAARGLD
501: IPDVAHVINF DLPNDIDDYV HRIGRTGRAG KSGLATAFFN EGNMSLARPL CELMQEANQE VPQWLERYSA RSSFGGGGGG RNRRSGGGGG ARFGGRDFRR
601: DTRGGGGGGG GGYGGGGGGG YGGGGGYGGG ASSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.