Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G454600.1 | Wheat | golgi | 99.53 | 99.53 |
| TraesCS5B01G464500.2 | Wheat | cytosol | 99.21 | 99.53 |
| HORVU5Hr1G109340.2 | Barley | plastid | 97.64 | 93.81 |
| Os03t0805200-01 | Rice | plastid | 87.26 | 87.13 |
| KXG37329 | Sorghum | cytosol, plastid | 84.28 | 84.41 |
| GSMUA_Achr8P15350_001 | Banana | plastid | 69.03 | 74.03 |
| GSMUA_Achr6P29700_001 | Banana | plastid | 65.41 | 71.97 |
| GSMUA_Achr5P14880_001 | Banana | cytosol, plastid | 68.55 | 71.95 |
| TraesCS4D01G148700.1 | Wheat | golgi | 67.61 | 71.55 |
| GSMUA_Achr4P17320_001 | Banana | plastid | 50.79 | 63.33 |
| GSMUA_Achr9P25390_001 | Banana | mitochondrion | 44.5 | 63.17 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 29.25 | 37.5 |
| TraesCS3D01G412400.2 | Wheat | cytosol | 30.19 | 33.39 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 26.57 | 31.65 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 30.19 | 29.4 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 26.73 | 27.96 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 31.13 | 25.1 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 31.92 | 25.09 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 30.03 | 23.85 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 27.99 | 21.58 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 28.62 | 17.72 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 34.43 | 16.54 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF363 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5D01G465100 | EnsemblPlants:TraesCS5D01G465100.1 | TIGR:cd00079 | TIGR:cd00268 | SEG:seg |
Description
No Description!
Coordinates
chr5D:-:507889225..507893122
Molecular Weight (calculated)
67200.0 Da
IEP (calculated)
7.635
GRAVY (calculated)
-0.391
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSSWADSVA NAEESAPATG AAPAPVANHQ NSRPTHSSYV PPHLRGGGRS PENQVPAAAP TPAGAYPSGA VQPSGGYAAA VGGTRWAAPP GAPSAGVGVV
101: RQGGGGRGAV GGGGGGWNSR PGGWGDRRDR EPNPFGDSEP AAVDVDFESQ QNTGINFDAY EDIPVETSGH DVPPAVNTFA EIDLGDALNE NIRRCKYVRP
201: TPVQRHAIPI VIGGRDLMAC AQTGSGKTAA FCFPIISGIL KSRPPQRPRA RTAFPLALIL SPTRELSVQI HEEAKKFAYQ TGVKACVAYG GAPIHQQLRE
301: LERGVDILVA TPGRLMDLLE RARVSLQMVN YLALDEADRM LDMGFEPQIR KIVEQMDMPP RGVRQTMLFS ATFPKEIQRL ASDFLADYIF LAVGRVGSST
401: DLIAQRVEFV LEADKRSYLM DLIHAQKAND VPGKNSLTLV FVETKRGADA LENWLYTNGF PATSIHGDRT QQEREYALRS FKSGATPILV ATDVAARGLD
501: IPDVAHVINF DLPNDIDDYV HRIGRTGRAG KSGLATAFFN EGNMSLARPL CELMQEANQE VPQWLERYSA RSSFGGGGGG RNRRSGGGGG ARFGGRDFRR
601: DTRGGGGGGG GGYGGGGGGG YGGGGGYGGG ASSSWD
101: RQGGGGRGAV GGGGGGWNSR PGGWGDRRDR EPNPFGDSEP AAVDVDFESQ QNTGINFDAY EDIPVETSGH DVPPAVNTFA EIDLGDALNE NIRRCKYVRP
201: TPVQRHAIPI VIGGRDLMAC AQTGSGKTAA FCFPIISGIL KSRPPQRPRA RTAFPLALIL SPTRELSVQI HEEAKKFAYQ TGVKACVAYG GAPIHQQLRE
301: LERGVDILVA TPGRLMDLLE RARVSLQMVN YLALDEADRM LDMGFEPQIR KIVEQMDMPP RGVRQTMLFS ATFPKEIQRL ASDFLADYIF LAVGRVGSST
401: DLIAQRVEFV LEADKRSYLM DLIHAQKAND VPGKNSLTLV FVETKRGADA LENWLYTNGF PATSIHGDRT QQEREYALRS FKSGATPILV ATDVAARGLD
501: IPDVAHVINF DLPNDIDDYV HRIGRTGRAG KSGLATAFFN EGNMSLARPL CELMQEANQE VPQWLERYSA RSSFGGGGGG RNRRSGGGGG ARFGGRDFRR
601: DTRGGGGGGG GGYGGGGGGG YGGGGGYGGG ASSSWD
001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
Arabidopsis Description
RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.