Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98304 | Canola | cytosol, plastid | 68.11 | 95.44 |
| CDX67752 | Canola | cytosol | 91.33 | 93.21 |
| Bra003343.1-P | Field mustard | cytosol | 91.33 | 91.76 |
| CDY49232 | Canola | cytosol | 88.08 | 91.04 |
| Bra007402.1-P | Field mustard | cytosol | 90.25 | 90.81 |
| CDX71944 | Canola | cytosol | 88.39 | 90.06 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 78.95 | 80.57 |
| AT3G58510.2 | Thale cress | cytosol | 74.92 | 79.08 |
| VIT_08s0007g07070.t01 | Wine grape | cytosol, plastid | 73.06 | 75.88 |
| Solyc03g052980.2.1 | Tomato | nucleus | 69.04 | 72.88 |
| KRH38030 | Soybean | endoplasmic reticulum | 68.89 | 72.83 |
| KRH71800 | Soybean | plastid | 68.42 | 72.34 |
| PGSC0003DMT400002828 | Potato | cytosol | 68.73 | 71.84 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 63.78 | 68.55 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 63.78 | 68.55 |
| TraesCS4D01G148700.1 | Wheat | golgi | 63.78 | 68.55 |
| Os11t0599500-00 | Rice | nucleus, plasma membrane | 65.79 | 68.22 |
| Zm00001d048924_P001 | Maize | plasma membrane | 63.47 | 67.43 |
| KXG28851 | Sorghum | cytosol, plastid | 64.09 | 66.24 |
| TraesCS4A01G141400.1 | Wheat | plastid | 63.93 | 62.96 |
| AT1G28180.1 | Thale cress | cytosol | 23.07 | 40.49 |
| AT5G63120.2 | Thale cress | cytosol | 31.73 | 34.69 |
| AT1G31970.1 | Thale cress | cytosol | 27.4 | 32.96 |
| AT1G55150.2 | Thale cress | cytosol | 26.78 | 32.89 |
| AT3G01540.2 | Thale cress | cytosol | 30.5 | 31.83 |
| AT4G33370.1 | Thale cress | cytosol | 25.23 | 30.07 |
| AT5G51280.1 | Thale cress | cytosol | 27.24 | 29.78 |
| AT5G14610.1 | Thale cress | cytosol | 32.66 | 29.63 |
| AT2G47330.1 | Thale cress | cytosol | 31.89 | 27.11 |
| AT2G33730.1 | Thale cress | nucleus | 30.34 | 26.74 |
| AT3G06480.1 | Thale cress | cytosol | 32.97 | 19.58 |
| AT3G09620.2 | Thale cress | nucleus | 29.41 | 19.19 |
| AT1G20920.3 | Thale cress | nucleus | 31.11 | 17.24 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:825026 | UniProt:A0A178V7W0 | ProteinID:AEE79800.1 | ArrayExpress:AT3G58570 |
| EnsemblPlantsGene:AT3G58570 | RefSeq:AT3G58570 | TAIR:AT3G58570 | RefSeq:AT3G58570-TAIR-G | EnsemblPlants:AT3G58570.1 | TAIR:AT3G58570.1 |
| EMBL:AY049285 | EMBL:AY088132 | EMBL:BT002731 | ProteinID:CAB68195.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_191416.1 | ProteinID:OAP02307.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF363 | UniProt:Q9M2F9 | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000AC286 | SEG:seg | : |
Description
RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
Coordinates
chr3:+:21656484..21660812
Molecular Weight (calculated)
69246.2 Da
IEP (calculated)
7.911
GRAVY (calculated)
-0.499
Length
646 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.