Factsheet for AT1G20920.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31513	Canola	nucleus	82.76	87.25
Bra025856.1-P	Field mustard	nucleus	87.56	87.19
CDY72529	Canola	cytosol	45.03	84.27
AT3G09620.2	Thale cress	nucleus	71.53	84.24
VIT_03s0038g04130.t01	Wine grape	nucleus	68.27	69.4
KRH77709	Soybean	nucleus	65.27	68.93
KRH27757	Soybean	nucleus	64.92	68.38
PGSC0003DMT400011665	Potato	nucleus	65.27	68.25
Solyc12g098700.1.1	Tomato	nucleus	65.87	66.96
TraesCS2D01G149500.1	Wheat	nucleus	45.37	64.12
Os08t0159900-01	Rice	extracellular, nucleus	57.29	63.68
EES14596	Sorghum	nucleus	57.63	63.28
Zm00001d024533_P001	Maize	nucleus	57.38	62.82
HORVU0Hr1G020490.1	Barley	nucleus	57.29	62.66
TraesCS7B01G187000.1	Wheat	nucleus	56.78	62.28
TraesCS7D01G294500.1	Wheat	nucleus	54.8	62.22
TraesCS7A01G298800.3	Wheat	nucleus	56.86	61.85
OQU79814	Sorghum	nucleus	52.23	61.7
GSMUA_Achr10P...	Banana	cytosol	51.03	59.44
TraesCS2B01G170700.1	Wheat	nucleus	48.63	55.75
HORVU2Hr1G025790.1	Barley	nucleus	47.43	54.27
AT1G28180.1	Thale cress	cytosol	12.26	38.86
AT1G55150.2	Thale cress	cytosol	16.81	37.26
AT5G63120.2	Thale cress	cytosol	18.52	36.55
AT2G47330.1	Thale cress	cytosol	23.24	35.66
AT5G51280.1	Thale cress	cytosol	17.15	33.84
AT4G33370.1	Thale cress	cytosol	15.61	33.58
AT1G31970.1	Thale cress	cytosol	14.92	32.4
AT3G58510.2	Thale cress	cytosol	16.9	32.19
AT2G42520.2	Thale cress	nucleus, plastid	16.98	31.28
AT3G58570.1	Thale cress	cytosol	17.24	31.11
AT3G01540.2	Thale cress	cytosol	15.09	28.43
AT2G33730.1	Thale cress	nucleus	17.75	28.24
AT5G14610.1	Thale cress	cytosol	15.87	25.98
AT3G06480.1	Thale cress	cytosol	16.72	17.92

Protein Annotations

MapMan:16.4.7.1.2	Gene3D:3.40.50.300	EntrezGene:838685	ProteinID:AAD30599.1	ProteinID:AEE30040.1	ProteinID:AEE30041.1
ProteinID:ANM59668.1	ProteinID:ANM59669.1	ProteinID:ANM59670.1	ProteinID:ANM59671.1	ProteinID:ANM59672.1	ArrayExpress:AT1G20920
EnsemblPlantsGene:AT1G20920	RefSeq:AT1G20920	TAIR:AT1G20920	RefSeq:AT1G20920-TAIR-G	EnsemblPlants:AT1G20920.3	Unigene:At.48212
EMBL:BT002030	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	RefSeq:NP_001077571.1	RefSeq:NP_001322011.1	RefSeq:NP_001322012.1	RefSeq:NP_001322013.1	RefSeq:NP_001322014.1
RefSeq:NP_001322015.1	RefSeq:NP_173516.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	UniProt:Q8H0U8
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00000A7C33
SEG:seg	:	:	:	:	:

Description

RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]

Coordinates

chr1:+:7285042..7289943

Molecular Weight (calculated)

133041.0 Da

IEP (calculated)

5.588

GRAVY (calculated)

-1.143

Length

1166 amino acids

Sequence
(BLAST)

0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.