Factsheet for VIT_03s0038g04130.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72529	Canola	cytosol	41.24	75.92
Solyc12g098700.1.1	Tomato	nucleus	73.23	73.23
PGSC0003DMT400011665	Potato	nucleus	71.14	73.18
KRH77709	Soybean	nucleus	69.66	72.37
KRH27757	Soybean	nucleus	69.49	72.0
AT3G09620.2	Thale cress	nucleus	59.11	68.48
AT1G20920.3	Thale cress	nucleus	69.4	68.27
CDY31513	Canola	nucleus	65.82	68.26
Bra025856.1-P	Field mustard	nucleus	69.49	68.06
Os08t0159900-01	Rice	extracellular, nucleus	59.9	65.49
Zm00001d024533_P001	Maize	nucleus	60.51	65.16
EES14596	Sorghum	nucleus	60.24	65.07
HORVU0Hr1G020490.1	Barley	nucleus	60.33	64.92
TraesCS7D01G294500.1	Wheat	nucleus	57.89	64.65
TraesCS7B01G187000.1	Wheat	nucleus	59.72	64.44
TraesCS7A01G298800.3	Wheat	nucleus	59.98	64.18
TraesCS2D01G149500.1	Wheat	nucleus	45.68	63.52
CDY44720	Canola	nucleus	47.43	62.96
Bra029779.1-P	Field mustard	nucleus	48.39	62.57
CDY41597	Canola	nucleus	42.11	62.48
OQU79814	Sorghum	nucleus	53.53	62.21
GSMUA_Achr10P...	Banana	cytosol	53.44	61.24
TraesCS2B01G170700.1	Wheat	nucleus	50.74	57.23
HORVU2Hr1G025790.1	Barley	nucleus	48.91	55.05
VIT_09s0002g02100.t01	Wine grape	cytosol	18.4	40.97
VIT_07s0005g01600.t01	Wine grape	cytosol	23.28	34.63
VIT_06s0004g00850.t01	Wine grape	cytosol	11.51	34.55
VIT_09s0002g08120.t01	Wine grape	cytosol	17.26	33.73
VIT_06s0004g08160.t01	Wine grape	plastid	16.3	32.92
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	17.44	32.15
VIT_13s0156g00070.t01	Wine grape	cytosol	17.18	31.93
VIT_11s0016g05090.t01	Wine grape	cytosol	16.22	30.34
VIT_03s0038g00010.t01	Wine grape	cytosol	18.66	30.06
VIT_17s0000g09130.t01	Wine grape	cytosol	15.78	29.62
VIT_09s0054g01810.t01	Wine grape	cytosol	18.31	29.62
VIT_02s0109g00380.t01	Wine grape	cytosol	15.34	28.03
VIT_14s0066g01020.t01	Wine grape	cytosol	16.48	21.9
VIT_05s0020g00470.t01	Wine grape	cytosol	17.61	17.52

Protein Annotations

EntrezGene:100262258	wikigene:100262258	MapMan:16.4.7.1.2	Gene3D:3.40.50.300	ProteinID:CCB60511	ProteinID:CCB60511.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6I0P5	EMBL:FN596508	GO:GO:0000166	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010468	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100262258	wikigene:LOC100262258	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC66760	TIGR:TC70022
UniParc:UPI000210A591	ArrayExpress:VIT_03s0038g04130	EnsemblPlantsGene:VIT_03s0038g04130	EnsemblPlants:VIT_03s0038g04130.t01	unigene:Vvi.6149	RefSeq:XP_002280049
RefSeq:XP_002280049.2	RefSeq:XP_010645588.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:2992576..2996657

Molecular Weight (calculated)

131402.0 Da

IEP (calculated)

5.656

GRAVY (calculated)

-1.141

Length

1147 amino acids

Sequence
(BLAST)

0001: MEKSRREDSD LKKSHRDRDR NGERHRERER DKEKKEHRES RRSEREKSSD DKHREKERDK HRDKRDKERT RSSRDDERDR ARERTKDREK ERDRDHEGRD
0101: AEREKERERD KESRERAREK EREDRERERE REKEREREKA REREREKERE REKERERERE REREKRDRER EDREREKERD RERLREREKR REPDRNDSSD
0201: GDDVRDRDRK RRRRDDDYKD RERDRSGRSN RHRDEGEDSP RKKSDDDDLD KKERRTREED LEEEQRKLDE EMEKRRRRVQ EWQELKRKRE ESEREKLGEA
0301: ANADEPKSGK TWTLEGESDD EDVAPTGNSE TDLNMDEDAK PTDNEVGDGM AIDSQNGTSA STLQNGDEGA DGDEEIDPLD AFMNSMVLPE VEKLNNAAVS
0401: PTSNAVVPSE DSDSDYGDLE NNEDPLEEED DDEFMKRVKK TKAERLSIVD HSKIDYKPFR KNFYIEVKES ARMTPEEIAA YRKQLELKIH GKDVPKPVKT
0501: WHQTGLTTKI LDTIKKLNYE RPMPIQAQAL PIIMSGRDCI GIAKTGSGKT LAFVLPMLRH IKDQPPVMPG DGPIGLIMAP TRELVQQIHS DIKKFAKVVG
0601: ISCVPVYGGS GVAQQISELK RGAEVVVCTP GRMIDILCTS GGKITNLRRV TYLVMDEADR MFDMGFEPQI TRIVQNTRPD RQTVLFSATF PRQVEILARR
0701: VLNKPVEIQV GGRSVVNKDI SQLVEVRPES ERFFRLLELL GEWYEKGKIL IFVHSQEKCD SLFRDLLKHG YPCLSLHGAK DQTDRESTIS DFKSNVCNLL
0801: IATSVAARGL DVKELELVIN FDVPNHYEDY VHRVGRTGRA GRKGSAITFI SDDDARYAPD LVKALELSEQ VVPDDLKALA DGFMAKVNQG LEQAHGTGYG
0901: GSGFKFNEEE DEVRRAAKKA QAKEYGFEED KSDSDDEDEG VRKAGGDISQ QAALAQIAAI AAASKVGAVS MPSTVPAAQL LPNGGLPVSL SGVLGLTIPG
1001: SVAAAVPGSV LPMTPNDGAA RAAALAAAIN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWRVTHKDTL IPISEWTGAA ITTRGQYYTT GKVPGPGERK
1101: LYLFIEGPTE QSVKRAKAEL KRVLEDFTIQ AISNPSAVQP GKYSVVK

Best Arabidopsis Sequence Match ( AT1G20920.4 )
(BLAST)

0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL

Arabidopsis Description

RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.