Factsheet for VIT_06s0004g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97325	Soybean	endoplasmic reticulum	81.41	52.62
KRH58901	Soybean	nucleus	82.98	51.63
KRH31589	Soybean	nucleus	81.15	51.32
KRH42811	Soybean	endoplasmic reticulum	82.98	51.21
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	82.2	50.48
PGSC0003DMT400010921	Potato	cytosol	79.32	50.33
PGSC0003DMT400081851	Potato	cytosol	79.32	50.17
Solyc01g005960.2.1	Tomato	plastid	79.32	50.17
VIT_13s0156g00070.t01	Wine grape	cytosol	80.37	49.76
VIT_11s0016g05090.t01	Wine grape	cytosol	67.28	41.92
VIT_09s0002g02100.t01	Wine grape	cytosol	36.65	27.18
VIT_06s0004g08160.t01	Wine grape	plastid	34.55	23.24
VIT_09s0002g08120.t01	Wine grape	cytosol	34.29	22.32
VIT_02s0109g00380.t01	Wine grape	cytosol	33.51	20.38
VIT_09s0054g01810.t01	Wine grape	cytosol	33.77	18.19
VIT_14s0066g01020.t01	Wine grape	cytosol	41.1	18.19
VIT_03s0038g00010.t01	Wine grape	cytosol	33.77	18.12
VIT_17s0000g09130.t01	Wine grape	cytosol	28.01	17.51
VIT_07s0005g01600.t01	Wine grape	cytosol	33.77	16.73
VIT_05s0020g00470.t01	Wine grape	cytosol	42.67	14.14
VIT_03s0038g04130.t01	Wine grape	nucleus	34.55	11.51

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB43790	ProteinID:CCB43790.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6GUJ5
EMBL:FN594951	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGR:TC58938	UniParc:UPI00021091CE
ArrayExpress:VIT_06s0004g00850	EnsemblPlantsGene:VIT_06s0004g00850	EnsemblPlants:VIT_06s0004g00850.t01	unigene:Vvi.24963	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:967985..973159

Molecular Weight (calculated)

42378.3 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.330

Length

382 amino acids

Sequence
(BLAST)

001: MGGPEGYISL VSVWTANAQA GYHLWELTVF HPILMWKEIN WRNLNLRDLE RGVDILVATP GRLVDLLERA RVSLQMIRYL ALDEADRMLD MGFEPQIRKI
101: VEQMDMPPQG VRQTMLFSAT FPKEIQKLAS DFLSNYVFLA VGRVGSSTDL IVQRVEFVHD TDKRSHLMDL LHAQRANGVH GKQYLTLVFV ETKKGADSLE
201: HWLCMNGFPA TTIHGDRTQQ EREQALRSFK SGVTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKT GLATAFFNDN NSSLAKALSE
301: LMQEANQEVP AWLSRYAARS PYVGRNRRSG GGGRFGGRDF RRDASFNRGG TDYYSGGNSS TGYGTAGGYG GGYGSGVTSA WD

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.