Factsheet for VIT_05s0020g00470.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36905	Soybean	nucleus	62.01	61.37
KRH11875	Soybean	endoplasmic reticulum	63.14	60.62
CDX74101	Canola	cytosol	43.97	57.88
CDY08048	Canola	nucleus	43.8	57.39
AT3G06480.1	Thale cress	cytosol	53.25	56.43
Bra001200.1-P	Field mustard	cytosol	51.08	55.99
Solyc01g057760.2.1	Tomato	nucleus	59.15	55.86
VIT_14s0066g01020.t01	Wine grape	cytosol	38.68	51.68
GSMUA_Achr1P15980_001	Banana	cytosol	45.62	49.81
VIT_09s0002g02100.t01	Wine grape	cytosol	21.6	48.35
TraesCS3A01G100200.1	Wheat	cytosol	50.74	43.85
TraesCS3D01G100900.1	Wheat	cytosol	50.3	43.81
Zm00001d007719_P010	Maize	cytosol	50.82	43.31
OQU84042	Sorghum	cytosol	52.12	43.3
TraesCS3B01G117000.1	Wheat	cytosol	50.39	43.13
Zm00001d048632_P001	Maize	cytosol	51.34	42.84
VIT_06s0004g00850.t01	Wine grape	cytosol	14.14	42.67
HORVU3Hr1G018170.3	Barley	cytosol	49.96	41.68
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	19.25	35.69
VIT_13s0156g00070.t01	Wine grape	cytosol	18.65	34.85
VIT_17s0000g09130.t01	Wine grape	cytosol	17.87	33.72
VIT_11s0016g05090.t01	Wine grape	cytosol	17.52	32.95
VIT_02s0109g00380.t01	Wine grape	cytosol	16.74	30.73
VIT_06s0004g08160.t01	Wine grape	plastid	15.09	30.63
VIT_09s0002g08120.t01	Wine grape	cytosol	14.83	29.13
VIT_07s0005g01600.t01	Wine grape	cytosol	18.39	27.5
VIT_09s0054g01810.t01	Wine grape	cytosol	16.05	26.09
VIT_03s0038g00010.t01	Wine grape	cytosol	15.78	25.56
VIT_03s0038g04130.t01	Wine grape	nucleus	17.52	17.61

Protein Annotations

EntrezGene:100252874	wikigene:100252874	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:CCB50275
ProteinID:CCB50275.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HE23	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005773	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100252874	wikigene:LOC100252874	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI000210845B	ArrayExpress:VIT_05s0020g00470
EnsemblPlantsGene:VIT_05s0020g00470	EnsemblPlants:VIT_05s0020g00470.t01	InterPro:WW_dom	InterPro:WW_dom_sf	RefSeq:XP_002274485	RefSeq:XP_002274485.2
RefSeq:XP_010649659.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:2386528..2393657

Molecular Weight (calculated)

125824.0 Da

IEP (calculated)

10.364

GRAVY (calculated)

-0.817

Length

1153 amino acids

Sequence
(BLAST)

0001: MATAEPAPSS LGPRYAPDDP TLPKPWKGLI DGSTGLLYYW NPETNITQYE KPTALPPPLP PGPPPAAATP KLAPIPAART MQTNGSLAHH GQQMNQAQQQ
0101: QGQQMMQTSQ QQGQQMSQFP QQHGQLMSQQ QGPQMAQSVQ QPGPQFGQAL QQQGQLTPQQ LGQQIVQHPG QQMQSQSLQQ MPQQPSQQLP QQLGPQTPQL
0201: LGQQTPQHPG SQMAQPQVHQ YAHQQMQYNV YQQHVPPPGQ QNSQQQTQHI AQGPPFQKQQ EFKTGFPQRE EIDFHQGSQV GFSPSQIQQT GTSSAQNMPA
0301: GVKSFQMPQS GGQTGQAQPF SGPSVSMQQQ HDPRFQNQMG PGMMHSQQPN IPPAGLKRGY DENPRGTAGN DYYFSANKEV PLSVSQQPKL AAIPSARNPQ
0401: EMRMGGVPVP NVPPGHAGGL NAVAGQAMHN MYSHATGGTG FSNNALMRPP SMMIGSSDIS TLSPVEVYCQ QHEVTATGEN VPPPLMTFEA TGFPPEILRE
0501: IYSAGFSSPT PIQAQTWPIA LQGRDIVAIA KTGSGKTLGY LIPAFILLRR RRNNVQNGPT VMVLAPTREL ATQIQDETIK FGRSSRVSCA CLYGGTSRNA
0601: QLKELDRGAD VVVATPGRLN DILESKKIDL GQISLLVLDE ADRMLDMGFE PQIRKIVNEI PPRRQTLMYT ATWPKEVRKI AGDLLVNPVQ VNIGSVDELA
0701: ANKAITQYVE VVSPPEKQRR LEQILRSQER GSKVIIFCST KKLCDQLARS IGRNFGAAVI HGDKSQVERD WVLNQFRSGK SPILVATDVA ARGLDIKDIR
0801: VVINYDFPTG IEDYVHRIGR TGRAGATGVS YTFFSEQDCK YAADLIKVLE GANQRVPPEV RDMALRSGPG FGKDRGGVNR FDSGGGGGRW DSGGRGSGMR
0901: DGGFGGRGSG MRDGGFGGRG GMRDGGFGGR GGMRDGAVGG HSGRNDFFSG RGNRGRGFGG PGGGNVGWGR NERGLHDRYS NMDGRGRGRG RGRFDNRRDV
1001: ADRSRGRSYS SSPEKVRTWG YSRSSSRSRS RSRSRSRSWS RSRSRSPRRS HSRSRSPRGS RSPGRSRSRS RSQGYDRYER SHDRHFDQKD LTQPEAQVPP
1101: ESTMSPMSPG TQAFPPQEFP GGDLDAHPPV VETTEQGHPL TGDESFHHPA PEP

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.