Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84042 | Sorghum | cytosol | 92.47 | 92.07 |
| Zm00001d007719_P010 | Maize | cytosol | 87.12 | 88.99 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 69.39 | 72.43 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 69.75 | 72.26 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 69.32 | 71.12 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 69.61 | 69.61 |
| Zm00001d008725_P003 | Maize | cytosol | 27.71 | 55.27 |
| Zm00001d039673_P002 | Maize | cytosol | 27.21 | 53.64 |
| CDX74101 | Canola | cytosol | 32.92 | 51.94 |
| CDY08048 | Canola | nucleus | 32.78 | 51.48 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 42.84 | 51.34 |
| Zm00001d011155_P012 | Maize | nucleus | 28.65 | 50.57 |
| KRH36905 | Soybean | nucleus | 42.4 | 50.3 |
| Zm00001d044510_P002 | Maize | mitochondrion | 29.09 | 50.12 |
| AT3G06480.1 | Thale cress | cytosol | 39.29 | 49.91 |
| Bra001200.1-P | Field mustard | cytosol | 37.99 | 49.9 |
| KRH11875 | Soybean | endoplasmic reticulum | 43.2 | 49.71 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 37.84 | 49.53 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.46 | 46.93 |
| Zm00001d039452_P002 | Maize | cytosol | 17.08 | 42.68 |
| Zm00001d042416_P002 | Maize | extracellular, plasma membrane | 18.52 | 40.13 |
| Zm00001d036897_P001 | Maize | extracellular | 16.57 | 37.3 |
| Zm00001d048924_P001 | Maize | plasma membrane | 15.7 | 35.69 |
| Zm00001d019449_P004 | Maize | nucleus | 13.02 | 35.43 |
| Zm00001d007755_P001 | Maize | plastid | 16.57 | 35.39 |
| Zm00001d007757_P004 | Maize | plastid | 16.5 | 34.44 |
| Zm00001d047502_P001 | Maize | extracellular | 12.59 | 28.16 |
| Zm00001d047633_P002 | Maize | nucleus | 15.56 | 27.99 |
| Zm00001d028898_P011 | Maize | cytosol | 15.2 | 27.27 |
| Zm00001d013453_P001 | Maize | nucleus | 13.17 | 24.8 |
| Zm00001d033704_P007 | Maize | extracellular | 13.17 | 24.66 |
| Zm00001d024533_P001 | Maize | nucleus | 14.69 | 19.06 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6PN67 | ProteinID:AQK48301.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI00084571E1 | InterPro:WW_dom | InterPro:WW_dom_sf | EnsemblPlantsGene:Zm00001d048632 |
| EnsemblPlants:Zm00001d048632_P001 | EnsemblPlants:Zm00001d048632_T001 | SEG:seg | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 40
Coordinates
chr4:-:1774602..1782805
Molecular Weight (calculated)
147393.0 Da
IEP (calculated)
10.093
GRAVY (calculated)
-0.800
Length
1382 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAQETATVD SSGPRFAPDD PTLPVPWKAL IDGATLYYWN PETNVTQYEK PAATAGVPPL AAGPPPSTPA QVPEPAPAAF SQPNVQFGQT GQAGHQERPS
0101: QAAYPPQAGQ LGQQHTQHPA QQQPFQHQAP FQQVPYQQQQ TPMPNQTHQY HSVHPQHMPY PHGPYMQPQQ QQQAPPYSYQ ADQQPQMPQT AYNQAQQPPM
0201: PQPSYNQGQN QQPPMPQPSY NQGQSQQPPM PQPSYNQGQV QQPPMPQPSY NQGQQSMMPQ SAYNQVQQPQ IPQSYNQSQQ PPGVRIPQSQ GQHPQQSLSF
0301: HHPAQASQSP QVSQPQGLKM TSQQGQPQHG LAFIQHGKSP LSHGQQSPLL KDDDGLHEGK RTGFSLPLSQ QHGQAPLPNQ QLPSSHQHPG ALSSQPNIPG
0401: VGGPLYPSKH LPGGSFSAET NNMGFMNSPA QMHQGGAGTN YQQKSVSGHA VPNHAGPSPI RPPMGSDMGN SDGHFERDDP HTYGRFDGAK ALQQQPKLAA
0501: LPTSQNPMGM HNGQPYPQPD NFGGYNMAPP HSVPNLHNLG PLPIGTSVRP PSSMLAPPDF PSISSADAYR QHHEVSTMGE NVPAPFMTFE STGFPPEILR
0601: EIHAAGFSNP TPIQAQTWPV ALQNRDIVAI AKTGSGKTLG YLIPAFIHLR RCHNNPMLGP TVLVLAPTRE LASQIQEEVV KFGQSSRVSC TCLYGGASKG
0701: PQLRELERGA DIVVATPGRL NDILEMKKIS LHQVSLLVLD EADRMLDMGF EPQIRKIVDE IPNTRQTLMY TATWPKEVTK IAGDLLRDPV QVNIGSIDEL
0801: VANKSITQYV EVVPPMDKQR RLEQILRDQE RGSKIIIFCS TKKMCDQLAR GIGRNFNALS IHGDKSQAER DNVLNQFRTG RAPILVATDV AARGLDIKDI
0901: RVVINYDFPT GIEDYVHRIG RTGRAGATGV SYTFFSEQDW KHAGDLVKLL QGANQHVPPQ LRDMAARSAS GGPRNQAAGM SRWDGPGGSR FEPGAGGFVG
1001: YGGVREGPGG FGGREGPGGF GVRESPAMFG GREGPDGLGG RGGPGGFGLR EGSGGHEGPG GFGGREGPGS FGGRKGPGGF VGRDGPGSSG FGGRGERGSG
1101: GFGSRGGASP GGFGGRGGRG DSPGFGGRGR GDFSGFGGRG RSDSPSFGGR GRGDFSGGRG GRGRGFGGRG RSDRGPRDRF VSDGRGRYDN RRGFGDKGRD
1201: RSYSRSPDRG RSRGYDRRSD GRSISRSRSR SRSWSRSRSR SRSWSRSRSR SSSRSRSRSN SRDHGAAPER RPRARSGFDV LPPAPGAAGP APAPAPVPGP
1301: AAPPVPAIAA QQSLADTSSM SPMSPGGVVQ PAAAPLICGG NDNSFGGIPT GQPLQGTDAA FPSFPAGENF PGAAVQQAAP DV
0101: QAAYPPQAGQ LGQQHTQHPA QQQPFQHQAP FQQVPYQQQQ TPMPNQTHQY HSVHPQHMPY PHGPYMQPQQ QQQAPPYSYQ ADQQPQMPQT AYNQAQQPPM
0201: PQPSYNQGQN QQPPMPQPSY NQGQSQQPPM PQPSYNQGQV QQPPMPQPSY NQGQQSMMPQ SAYNQVQQPQ IPQSYNQSQQ PPGVRIPQSQ GQHPQQSLSF
0301: HHPAQASQSP QVSQPQGLKM TSQQGQPQHG LAFIQHGKSP LSHGQQSPLL KDDDGLHEGK RTGFSLPLSQ QHGQAPLPNQ QLPSSHQHPG ALSSQPNIPG
0401: VGGPLYPSKH LPGGSFSAET NNMGFMNSPA QMHQGGAGTN YQQKSVSGHA VPNHAGPSPI RPPMGSDMGN SDGHFERDDP HTYGRFDGAK ALQQQPKLAA
0501: LPTSQNPMGM HNGQPYPQPD NFGGYNMAPP HSVPNLHNLG PLPIGTSVRP PSSMLAPPDF PSISSADAYR QHHEVSTMGE NVPAPFMTFE STGFPPEILR
0601: EIHAAGFSNP TPIQAQTWPV ALQNRDIVAI AKTGSGKTLG YLIPAFIHLR RCHNNPMLGP TVLVLAPTRE LASQIQEEVV KFGQSSRVSC TCLYGGASKG
0701: PQLRELERGA DIVVATPGRL NDILEMKKIS LHQVSLLVLD EADRMLDMGF EPQIRKIVDE IPNTRQTLMY TATWPKEVTK IAGDLLRDPV QVNIGSIDEL
0801: VANKSITQYV EVVPPMDKQR RLEQILRDQE RGSKIIIFCS TKKMCDQLAR GIGRNFNALS IHGDKSQAER DNVLNQFRTG RAPILVATDV AARGLDIKDI
0901: RVVINYDFPT GIEDYVHRIG RTGRAGATGV SYTFFSEQDW KHAGDLVKLL QGANQHVPPQ LRDMAARSAS GGPRNQAAGM SRWDGPGGSR FEPGAGGFVG
1001: YGGVREGPGG FGGREGPGGF GVRESPAMFG GREGPDGLGG RGGPGGFGLR EGSGGHEGPG GFGGREGPGS FGGRKGPGGF VGRDGPGSSG FGGRGERGSG
1101: GFGSRGGASP GGFGGRGGRG DSPGFGGRGR GDFSGFGGRG RSDSPSFGGR GRGDFSGGRG GRGRGFGGRG RSDRGPRDRF VSDGRGRYDN RRGFGDKGRD
1201: RSYSRSPDRG RSRGYDRRSD GRSISRSRSR SRSWSRSRSR SRSWSRSRSR SSSRSRSRSN SRDHGAAPER RPRARSGFDV LPPAPGAAGP APAPAPVPGP
1301: AAPPVPAIAA QQSLADTSSM SPMSPGGVVQ PAAAPLICGG NDNSFGGIPT GQPLQGTDAA FPSFPAGENF PGAAVQQAAP DV
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.