Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36905 | Soybean | nucleus | 90.76 | 93.56 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 60.62 | 63.14 |
| CDX74101 | Canola | cytosol | 41.3 | 56.62 |
| CDY08048 | Canola | nucleus | 40.97 | 55.91 |
| AT3G06480.1 | Thale cress | cytosol | 50.12 | 55.33 |
| KRH56577 | Soybean | nucleus | 35.64 | 55.23 |
| KRG93254 | Soybean | endoplasmic reticulum | 35.64 | 55.15 |
| Bra001200.1-P | Field mustard | cytosol | 47.88 | 54.66 |
| Solyc01g057760.2.1 | Tomato | nucleus | 53.62 | 52.74 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 42.71 | 48.58 |
| KRH44155 | Soybean | cytosol | 20.32 | 48.13 |
| KRH47127 | Soybean | nucleus | 20.23 | 47.93 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 49.13 | 44.56 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 49.38 | 44.45 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 17.57 | 44.33 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 49.21 | 43.88 |
| OQU84042 | Sorghum | cytosol | 50.62 | 43.8 |
| KRH03228 | Soybean | nucleus | 21.9 | 43.69 |
| Zm00001d048632_P001 | Maize | cytosol | 49.71 | 43.2 |
| Zm00001d007719_P010 | Maize | cytosol | 48.54 | 43.09 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 49.04 | 42.62 |
| KRH57127 | Soybean | endoplasmic reticulum, nucleus | 21.65 | 42.48 |
| KRH58901 | Soybean | nucleus | 18.65 | 36.48 |
| KRH42811 | Soybean | endoplasmic reticulum | 18.65 | 36.19 |
| KRH38030 | Soybean | endoplasmic reticulum | 18.4 | 36.17 |
| KRG97325 | Soybean | endoplasmic reticulum | 17.65 | 35.87 |
| KRH74291 | Soybean | nucleus | 15.9 | 35.57 |
| KRH71800 | Soybean | plastid | 18.07 | 35.52 |
| KRH39630 | Soybean | nucleus | 15.65 | 35.01 |
| KRH31589 | Soybean | nucleus | 17.49 | 34.77 |
| KRH20283 | Soybean | plastid | 16.49 | 33.79 |
| KRH03709 | Soybean | plastid | 16.65 | 32.79 |
| KRG98124 | Soybean | endoplasmic reticulum | 13.99 | 29.42 |
| KRG94409 | Soybean | cytosol | 14.4 | 29.42 |
| KRH30661 | Soybean | endoplasmic reticulum | 13.82 | 29.38 |
| KRH68534 | Soybean | cytosol | 14.32 | 29.3 |
| KRG96540 | Soybean | cytosol, mitochondrion | 17.07 | 26.69 |
| KRH68277 | Soybean | nucleus | 17.07 | 26.21 |
| KRH51212 | Soybean | nucleus | 14.82 | 25.39 |
| KRH01937 | Soybean | nucleus | 14.49 | 24.65 |
| KRH77709 | Soybean | nucleus | 17.24 | 18.75 |
| KRH27757 | Soybean | nucleus | 16.99 | 18.43 |
Protein Annotations
| EntrezGene:100806371 | Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:ACUP02009243 | InterPro:DEAD/DEAH_box_helicase_dom |
| EnsemblPlantsGene:GLYMA_15G136300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:K7MB77 | EnsemblPlants:KRH11875 | ProteinID:KRH11875 |
| ProteinID:KRH11875.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI000294B64A | InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr15:+:11013168..11021140
Molecular Weight (calculated)
131327.0 Da
IEP (calculated)
10.425
GRAVY (calculated)
-0.848
Length
1201 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATAEAASAG LGPRYAPDDP TLPQPWKGLI DGSTGLLYYW NPETNVTQYE KPTPPVPSGP APSLAPIPGA HTVQPGGKVQ QHGQQMQQVQ SSQQQMGHLT
0101: QQHGQSMPPQ QQSPHMAQVT QQQSSHGAQA AQQQNQHGQK MMQQPQGQQM MQQPQGQQMM QQPQGQQMMQ QPQGQQMMQP QGHQARQQMM QPQGQQMHRQ
0201: MPPQAIHSQH FVQGMPQDHG SHIVQPQTHQ FTPQNMHYMS YQQNAITSRQ PNSQHSQPNM VSPGQPNSQQ VQHNMHGQPF ENQQTTYPKV EEVDSKNGSQ
0301: VGHSPSQYPQ RSALPVQNNQ NIPAEVGSGQ VPNVGVNAGQ PQQFRALSNS MQQSPSGSDL YYQHGPNFHS QMSPGMMHGH PSNVLPSGQK MGPEDSLRVR
0401: AGNEYYYNSN KDMATMGRQQ PDITPIPIPR NQQDMRIGNT PFQNVMPSGN GSGIAGNAVP SMFVPPIGGP SPLSTNPLMR PPYMGSSDAT DLSPAEIYCQ
0501: QHEVTATGDN IPPPFMTFDA TGFPPEILRE IYSAGFSSPT PIQAQTWPVA LQGRDIVAIA KTGSGKTLGY LMPAFILLRQ RCNNSLNGPT VLVLAPTREL
0601: ATQIQDEVVK FGRSSRVSCT CLYGGAPKAL QLKELDRGAD IVVATPGRLN DILEMKKIDF GQVSLLVLDE ADRMLDMGFE PQIRKIVNEI PPRRQTLMYT
0701: ATWPKEVRKI ASDLLVNPVQ VNIGSVDELA ANKAITQYVE VVPQMEKQRR LEQILRSQER GSKVIIFCST KRLCDQLARS IGRTFGAAAI HGDKSQGERD
0801: WVLSQFRTGK SPILVATDVA ARGLDIKDIR VVINYDFPTG IEDYVHRIGR TGRAGATGVS YTFFSEQDWK HAGDLIKVLE GANQHVLPEL RQMALRGPSN
0901: FGKDRGGVSR FDSGGGGGRW DTGGRGGMRD GGFGGRGGGM RDGGFGGRGG GFGGRGGGMR DGSFGGRGGG FGGRGGIRDG GSGQGGRGDF FPGRGNRGRG
1001: SGGPRGGHVG WGRGERGMDD RYNMDGRGQG RGRGRFDNRR DVSYKGRGRS YSRSPERVRT WDYSRSSSRS RSRSRSRSWS RGRSRSRSWS RGRSRSYSRS
1101: ISPRRNRSRS RGRSYSRSHS RSPSYDRRNR SDQQLPDQKD LRAQEVGTSD PRMLPVSSGS GSQGNSFLGT EQVEQQPVVS STDAGNPEAV ADLSHQSASD
1201: I
0101: QQHGQSMPPQ QQSPHMAQVT QQQSSHGAQA AQQQNQHGQK MMQQPQGQQM MQQPQGQQMM QQPQGQQMMQ QPQGQQMMQP QGHQARQQMM QPQGQQMHRQ
0201: MPPQAIHSQH FVQGMPQDHG SHIVQPQTHQ FTPQNMHYMS YQQNAITSRQ PNSQHSQPNM VSPGQPNSQQ VQHNMHGQPF ENQQTTYPKV EEVDSKNGSQ
0301: VGHSPSQYPQ RSALPVQNNQ NIPAEVGSGQ VPNVGVNAGQ PQQFRALSNS MQQSPSGSDL YYQHGPNFHS QMSPGMMHGH PSNVLPSGQK MGPEDSLRVR
0401: AGNEYYYNSN KDMATMGRQQ PDITPIPIPR NQQDMRIGNT PFQNVMPSGN GSGIAGNAVP SMFVPPIGGP SPLSTNPLMR PPYMGSSDAT DLSPAEIYCQ
0501: QHEVTATGDN IPPPFMTFDA TGFPPEILRE IYSAGFSSPT PIQAQTWPVA LQGRDIVAIA KTGSGKTLGY LMPAFILLRQ RCNNSLNGPT VLVLAPTREL
0601: ATQIQDEVVK FGRSSRVSCT CLYGGAPKAL QLKELDRGAD IVVATPGRLN DILEMKKIDF GQVSLLVLDE ADRMLDMGFE PQIRKIVNEI PPRRQTLMYT
0701: ATWPKEVRKI ASDLLVNPVQ VNIGSVDELA ANKAITQYVE VVPQMEKQRR LEQILRSQER GSKVIIFCST KRLCDQLARS IGRTFGAAAI HGDKSQGERD
0801: WVLSQFRTGK SPILVATDVA ARGLDIKDIR VVINYDFPTG IEDYVHRIGR TGRAGATGVS YTFFSEQDWK HAGDLIKVLE GANQHVLPEL RQMALRGPSN
0901: FGKDRGGVSR FDSGGGGGRW DTGGRGGMRD GGFGGRGGGM RDGGFGGRGG GFGGRGGGMR DGSFGGRGGG FGGRGGIRDG GSGQGGRGDF FPGRGNRGRG
1001: SGGPRGGHVG WGRGERGMDD RYNMDGRGQG RGRGRFDNRR DVSYKGRGRS YSRSPERVRT WDYSRSSSRS RSRSRSRSWS RGRSRSRSWS RGRSRSYSRS
1101: ISPRRNRSRS RGRSYSRSHS RSPSYDRRNR SDQQLPDQKD LRAQEVGTSD PRMLPVSSGS GSQGNSFLGT EQVEQQPVVS STDAGNPEAV ADLSHQSASD
1201: I
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.