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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74101 Canola cytosol 98.52 98.97
Bra001200.1-P Field mustard cytosol 97.84 81.84
AT3G06480.1 Thale cress cytosol 86.93 70.31
CDY28671 Canola cytosol 38.3 50.83
CDX91943 Canola cytosol 38.07 50.38
CDX91036 Canola cytosol 38.52 49.56
CDX74304 Canola cytosol 38.18 48.84
CDY10596 Canola nucleus 25.8 45.49
CDY02459 Canola cytosol 25.57 45.09
CDX85591 Canola cytosol 38.41 44.95
VIT_05s0020g00470.t01 Wine grape cytosol 57.39 43.8
KRH36905 Soybean nucleus 56.25 42.49
KRH11875 Soybean endoplasmic reticulum 55.91 40.97
CDY47978 Canola plastid 19.32 40.67
CDY16735 Canola cytosol 27.05 40.27
CDY48128 Canola cytosol 27.16 40.24
GSMUA_Achr1P15980_001 Banana cytosol 48.18 40.15
Solyc01g057760.2.1 Tomato nucleus 54.66 39.39
CDX98304 Canola cytosol, plastid 19.32 36.88
CDX84672 Canola cytosol 17.84 35.12
CDY41747 Canola nucleus 21.14 34.44
CDY65864 Canola nucleus 20.8 34.27
CDY66221 Canola nucleus 20.8 34.14
TraesCS3D01G100900.1 Wheat cytosol 50.91 33.84
TraesCS3A01G100200.1 Wheat cytosol 51.02 33.66
CDX71948 Canola cytosol 22.5 33.17
CDY06034 Canola cytosol 21.59 33.04
OQU84042 Sorghum cytosol 51.93 32.93
Zm00001d007719_P010 Maize cytosol 50.57 32.89
TraesCS3B01G117000.1 Wheat cytosol 50.34 32.89
Zm00001d048632_P001 Maize cytosol 51.48 32.78
CDX67749 Canola cytosol 22.27 32.56
CDX98301 Canola cytosol 21.93 32.11
HORVU3Hr1G018170.3 Barley cytosol 50.23 31.98
CDY14843 Canola cytosol, plastid 22.05 31.7
CDY49232 Canola cytosol 22.39 31.52
CDX67752 Canola cytosol 22.27 30.96
CDX71944 Canola cytosol 22.27 30.91
CDX67949 Canola cytosol 18.98 30.7
CDX87315 Canola cytosol 18.07 30.7
CDY61276 Canola cytosol 18.07 30.64
CDY38671 Canola cytosol 17.95 30.44
CDY39973 Canola cytosol 17.84 30.31
CDX83333 Canola nucleus 20.45 28.26
CDX84112 Canola nucleus 9.43 27.67
CDY72529 Canola cytosol 19.2 27.13
CDY53786 Canola nucleus 17.73 26.44
CDY37696 Canola nucleus 17.73 26.44
CDY37796 Canola cytosol 21.93 26.29
CDX80096 Canola cytosol 21.48 25.96
CDX95719 Canola cytosol 21.59 25.85
CDX88990 Canola cytosol, plastid 16.36 25.81
CDX79541 Canola nucleus 17.16 24.01
CDX79384 Canola cytosol 10.45 23.59
CDY44720 Canola nucleus 21.25 21.64
CDY41597 Canola nucleus 18.41 20.96
CDY00570 Canola nucleus 12.5 18.12
CDY31513 Canola nucleus 21.02 16.73
CDX91039 Canola cytosol 2.5 12.57
CDX91037 Canola cytosol 2.5 12.57
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1GO:A0A078F8I3UniProt:A0A078F8I3EnsemblPlants:CDY08048ProteinID:CDY08048
ProteinID:CDY08048.1InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0005524EnsemblPlantsGene:GSBRNA2T00125302001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001
InterPro:IPR014014InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192
PFscan:PS51194PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF255InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487SMART:SM00490SUPFAM:SSF52540UniParc:UPI0004EDBFF0SEG:seg:
Description
BnaC03g34750DBnaC03g34750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8I3]
Coordinates
chrLK031982:+:859953..863518
Molecular Weight (calculated)
96642.7 Da
IEP (calculated)
10.561
GRAVY (calculated)
-0.797
Length
880 amino acids
Sequence
(BLAST)
001: MPQQLSHQYP HSQQQYMGYR PYMQPQGNQN SHQMGPQGQQ FPSQQEYNSM PPKREGEEFH RGEKTGFSQP HLQNSEASPS QNTAFEAKAS SQRPNATQQY
101: NGPQGSFQHP AAVTQFQQPG ANLAHQQLGP RPPHHMDQML HQKSHASPFR SNNTYENNLQ ARPGNDSYGN TRMEGPMRGA QPRHPAAMPE DIRIGGGPPA
201: HADPAMGQTG HGPYGHAGPA FPTAGRPHFA TTPDGPHLSP VDSYRKQHEI TVTGENTPAP FITFESSGLP PELLRELLSA GFPSPTPIQA QTWPIALQNR
301: DIVAIAKTGS GKTLGYLIPA FTLLRHCRND PRNGPTVLIL APTRELATQI QNEALRFGRS SRISCTCLYG GAPKGPQLQE LERGADIVVA TPGRLNDILE
401: MRKINFQQVS LLVLDEADRM LDMGFEPQIR KIVNEIPPRR QTLMYTATWP NEVRKIANDL LVNPVQVNIG SVDELAANKA ITQYVEVVPQ MEKERRLEQI
501: LRSQERGSKV IIFCATKRLC DHLSRSVGRN FGAVVIHGDK SQGERDWVLN QFRSGKSCVL IATDVAARGL DIKDIRVVIN YDFPTGVEDY VHRIGRTGRA
601: GATGVAFTFF TEQDWKYAPD LIKVLERANQ QVPPQVRDIA MRGGDGGGPG FNQDRRGMVN RFDSGRGGSR WDSAGEFGGR GGGFGGRSGG FGMRDDSFGR
701: GRGFPGPDGG GRMNVGRGGF GRFGNNNMDG RGFGRGGGGR GFGRGGGGGG GRFDNRRGRS RSRSPDLVRP RCSPSYSRSR SRSYSRSRSR SWSRSRSRSP
801: RRSGHKRSRS YSRSPSPVYE RRDRRPRVSG FDIKPPAESV VNPDTVGTAA SETVVPTPLS ERQGNGVVES EVEAALVDKP
Best Arabidopsis Sequence Match ( AT3G06480.1 )
(BLAST)
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.