Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023227.1-P | Field mustard | nucleus | 99.25 | 97.61 |
| CDY66221 | Canola | nucleus | 97.19 | 96.83 |
| CDY41747 | Canola | nucleus | 90.64 | 89.63 |
| AT1G31970.1 | Thale cress | cytosol | 89.51 | 89.01 |
| CDX84112 | Canola | nucleus | 48.31 | 86.0 |
| EER96257 | Sorghum | cytosol | 65.92 | 68.75 |
| Os07t0301200-01 | Rice | cytosol | 65.73 | 68.55 |
| Zm00001d019449_P004 | Maize | nucleus | 64.79 | 68.11 |
| KRH39630 | Soybean | nucleus | 67.6 | 67.23 |
| KRH74291 | Soybean | nucleus | 67.6 | 67.23 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 65.36 | 65.85 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 65.73 | 65.73 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 65.36 | 65.72 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 65.73 | 65.61 |
| Solyc08g076200.2.1 | Tomato | nucleus | 65.17 | 62.93 |
| PGSC0003DMT400024026 | Potato | nucleus | 65.36 | 62.66 |
| GSMUA_Achr11P... | Banana | nucleus | 66.29 | 61.35 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 67.79 | 57.64 |
| CDY02459 | Canola | cytosol | 36.7 | 39.28 |
| CDY10596 | Canola | nucleus | 36.52 | 39.08 |
| CDY47978 | Canola | plastid | 28.65 | 36.6 |
| CDX98304 | Canola | cytosol, plastid | 28.65 | 33.19 |
| CDY16735 | Canola | cytosol | 36.52 | 32.99 |
| CDX84672 | Canola | cytosol | 27.53 | 32.89 |
| CDY48128 | Canola | cytosol | 36.33 | 32.66 |
| CDY06034 | Canola | cytosol | 32.58 | 30.26 |
| CDX67749 | Canola | cytosol | 32.96 | 29.24 |
| CDX67949 | Canola | cytosol | 29.78 | 29.23 |
| CDX71948 | Canola | cytosol | 32.58 | 29.15 |
| CDX98301 | Canola | cytosol | 32.58 | 28.95 |
| CDY14843 | Canola | cytosol, plastid | 33.15 | 28.92 |
| CDY38671 | Canola | cytosol | 27.9 | 28.71 |
| CDX87315 | Canola | cytosol | 27.72 | 28.57 |
| CDY61276 | Canola | cytosol | 27.72 | 28.52 |
| CDY39973 | Canola | cytosol | 27.53 | 28.38 |
| CDY49232 | Canola | cytosol | 32.58 | 27.84 |
| CDX71944 | Canola | cytosol | 32.77 | 27.6 |
| CDX67752 | Canola | cytosol | 32.58 | 27.49 |
| CDX83333 | Canola | nucleus | 32.4 | 27.16 |
| CDY28671 | Canola | cytosol | 33.52 | 27.0 |
| CDX91943 | Canola | cytosol | 33.52 | 26.92 |
| CDY53786 | Canola | nucleus | 29.4 | 26.61 |
| CDX91036 | Canola | cytosol | 33.52 | 26.17 |
| CDY37696 | Canola | nucleus | 28.84 | 26.1 |
| CDX74304 | Canola | cytosol | 33.52 | 26.02 |
| CDY72529 | Canola | cytosol | 29.03 | 24.88 |
| CDX85591 | Canola | cytosol | 33.71 | 23.94 |
| CDX80096 | Canola | cytosol | 32.4 | 23.76 |
| CDX95719 | Canola | cytosol | 32.58 | 23.67 |
| CDX88990 | Canola | cytosol, plastid | 24.72 | 23.66 |
| CDY37796 | Canola | cytosol | 32.4 | 23.57 |
| CDX79541 | Canola | nucleus | 27.53 | 23.37 |
| CDX79384 | Canola | cytosol | 15.36 | 21.03 |
| CDX74101 | Canola | cytosol | 34.27 | 20.89 |
| CDY08048 | Canola | nucleus | 34.27 | 20.8 |
| CDY44720 | Canola | nucleus | 30.52 | 18.87 |
| CDY41597 | Canola | nucleus | 25.84 | 17.85 |
| CDY31513 | Canola | nucleus | 30.15 | 14.56 |
| CDY00570 | Canola | nucleus | 16.29 | 14.33 |
| CDX91039 | Canola | cytosol | 1.87 | 5.71 |
| CDX91037 | Canola | cytosol | 1.87 | 5.71 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078JGP3 | UniProt:A0A078JGP3 | EnsemblPlants:CDY65864 | ProteinID:CDY65864 |
| ProteinID:CDY65864.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00050916001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE589E | SEG:seg | : | : | : |
Description
BnaA09g53730DBnaA09g53730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGP3]
Coordinates
chrLK034982:-:4906..7776
Molecular Weight (calculated)
59299.4 Da
IEP (calculated)
9.424
GRAVY (calculated)
-0.514
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKKQELPV SGEPLAAVES PMTDTIEKKK KKKSKKNKHA EVEVPQEVVT NGEELSSKEK KKKRKREEKE KEKEKEEKKK KEEESEVVPE KKAGESEQKV
101: VVTGKGAEEA KYAALTSFAE SKLPENVLDC CKTFQKPSPI QSHSWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHMLKKN KSGKGTRNPA CLVLSPTREL
201: AVQISDVLSE AGEPCGLKSI CVYGGSSKRP QINAIRSGVD IVIGTPGRLR DLIESNELRL SDVSFVVLDE ADRMLDMGFE EPVRFILSKT NKVRQMVMFS
301: ATWPIDVHKL AQEFMDPNPV KIVIGSEDLA ANHDVMQIVE VLDDRARDQR LIALLEKYHK SQKNRVLVFA LYKVEADRLE RFLQQRGWKA VSIHGNKAQS
401: ERTRSLALFK EGSCPLLVAT DVAARGLDIP DVEVVINYSF PLTTEDYVHR IGRTGRAGKK GVAHTFFTQQ NKGLAGELVN VLREAGQVVP TDLTKFGTHV
501: KKKESKLYGA HFKEIAADAP KATKITFADS DDED
101: VVTGKGAEEA KYAALTSFAE SKLPENVLDC CKTFQKPSPI QSHSWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHMLKKN KSGKGTRNPA CLVLSPTREL
201: AVQISDVLSE AGEPCGLKSI CVYGGSSKRP QINAIRSGVD IVIGTPGRLR DLIESNELRL SDVSFVVLDE ADRMLDMGFE EPVRFILSKT NKVRQMVMFS
301: ATWPIDVHKL AQEFMDPNPV KIVIGSEDLA ANHDVMQIVE VLDDRARDQR LIALLEKYHK SQKNRVLVFA LYKVEADRLE RFLQQRGWKA VSIHGNKAQS
401: ERTRSLALFK EGSCPLLVAT DVAARGLDIP DVEVVINYSF PLTTEDYVHR IGRTGRAGKK GVAHTFFTQQ NKGLAGELVN VLREAGQVVP TDLTKFGTHV
501: KKKESKLYGA HFKEIAADAP KATKITFADS DDED
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Arabidopsis Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.