Factsheet for GSMUA_Achr11P06200_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96257	Sorghum	cytosol	67.24	75.78
Zm00001d019449_P004	Maize	nucleus	66.03	75.0
Os07t0301200-01	Rice	cytosol	66.55	75.0
TraesCS5A01G114400.1	Wheat	nucleus	67.07	72.34
TraesCS5D01G125100.1	Wheat	nucleus	66.72	72.1
HORVU5Hr1G037290.3	Barley	nucleus	66.03	71.89
TraesCS5B01G120500.1	Wheat	nucleus	66.03	71.75
KRH74291	Soybean	nucleus	64.3	69.09
KRH39630	Soybean	nucleus	64.3	69.09
CDY65864	Canola	nucleus	61.35	66.29
CDY66221	Canola	nucleus	60.83	65.49
Bra023227.1-P	Field mustard	nucleus	61.18	65.01
AT1G31970.1	Thale cress	cytosol	60.31	64.8
Solyc08g076200.2.1	Tomato	nucleus	61.7	64.38
PGSC0003DMT400024026	Potato	nucleus	61.87	64.09
Bra035518.1-P	Field mustard	nucleus	58.93	63.43
CDY41747	Canola	nucleus	59.27	63.33
VIT_02s0109g00380.t01	Wine grape	cytosol	64.3	59.08
CDX84112	Canola	nucleus	25.82	49.67
GSMUA_Achr8P01340_001	Banana	cytosol	30.68	46.21
GSMUA_Achr10P...	Banana	cytosol	34.14	39.64
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	30.5	29.04
GSMUA_Achr8P15350_001	Banana	plastid	29.81	29.01
GSMUA_Achr9P25390_001	Banana	mitochondrion	21.49	27.68
GSMUA_Achr6P29700_001	Banana	plastid	27.38	27.34
GSMUA_Achr2P09160_001	Banana	cytosol	24.61	25.96
GSMUA_Achr4P17320_001	Banana	plastid	22.18	25.1
GSMUA_Achr1P13820_001	Banana	mitochondrion	23.57	25.09
GSMUA_Achr3P01410_001	Banana	nucleus	22.53	24.67
GSMUA_Achr1P13000_001	Banana	cytosol	28.25	23.49
GSMUA_Achr1P24870_001	Banana	cytosol	26.52	23.08
GSMUA_Achr8P31890_001	Banana	nucleus	31.37	23.03
GSMUA_Achr5P06030_001	Banana	nucleus	28.6	22.95
GSMUA_Achr1P15980_001	Banana	cytosol	32.24	17.61
GSMUA_Achr10P...	Banana	cytosol	25.82	14.89

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr11G06200_001
EnsemblPlants:GSMUA_Achr11P06200_001	EnsemblPlants:GSMUA_Achr11T06200_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M0RPV0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295D1C2	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr11G06200_001]

Coordinates

chr11:+:4817919..4827191

Molecular Weight (calculated)

63383.9 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.551

Length

577 amino acids

Sequence
(BLAST)

001: MGRVLADDMA PSIDHETLHV AMEEEKKKNK KKNKEFENGE ALTLTPDSTE NGGEEHMNGT KKKKNKKKKK RKIVEAELDS SSKNSGTLGN DSEKTKKKKK
101: REGEQGAISK EEPALDSRRE RKQVEEGGTQ GEGPEAGGGG GVIVSGNNTS DPKYKALSSF AESGLPAKVL DCCKDFSKPS PIQSHAWPFL LEGRDFIGIA
201: ATGSGKTLAF GVPALMHILK IKSEKTSKKT VPRCLVLSPT RELAQQIEDV LSDAGTLPGI KSVCLYGGTS KGPQISSLKS GVDIVVGTPG RMKDLIEMGV
301: CQLKDVSFVV LDEADRMLDM GFEPEVRSIL NQTSSVRQMV MFSATWPLAV DQLAREFMDP NPVKVVVGSE DLSANHDVMQ IVEVLEDRQR DSRLVTLLEK
401: YHQSQRNRVL VFVLYKKEAA RVENMLQRRG WKAVSVHGDK AQHDRTKALC LFKEGKCPLM IATDVASRGL DIPDVEVVIN YSFPLTTEDY VHRIGRTGRA
501: GKKGVAHTFF TKENKGLAGE LVNVLREAGQ TVPTALTNFG THVKKKESKL YGSHFKEITV DAPKSTKITF TNSDDED

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.