Factsheet for GSMUA_Achr5P06030_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15350_001	Banana	plastid	49.24	59.7
GSMUA_Achr6P29700_001	Banana	plastid	47.84	59.52
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	47.98	56.93
GSMUA_Achr9P25390_001	Banana	mitochondrion	34.49	55.36
Os06t0602400-01	Rice	nucleus, plasma membrane	37.13	55.17
VIT_11s0016g05090.t01	Wine grape	cytosol	46.73	54.81
KRH20283	Soybean	plastid	41.59	51.02
OQU76674	Sorghum	cytosol	40.06	50.79
GSMUA_Achr4P17320_001	Banana	plastid	35.33	49.8
KRH03709	Soybean	plastid	41.86	49.34
Zm00001d036897_P001	Maize	extracellular	40.47	47.39
HORVU7Hr1G084210.1	Barley	cytosol	39.64	46.72
GSMUA_Achr8P01340_001	Banana	cytosol	23.09	43.34
TraesCS7A01G374000.1	Wheat	nucleus	41.03	41.73
GSMUA_Achr10P...	Banana	cytosol	25.59	37.02
GSMUA_Achr11P...	Banana	nucleus	22.95	28.6
GSMUA_Achr2P09160_001	Banana	cytosol	20.58	27.06
GSMUA_Achr1P13820_001	Banana	mitochondrion	19.47	25.83
GSMUA_Achr1P13000_001	Banana	cytosol	23.5	24.35
GSMUA_Achr8P31890_001	Banana	nucleus	26.56	24.3
GSMUA_Achr1P24870_001	Banana	cytosol	22.25	24.13
GSMUA_Achr3P01410_001	Banana	nucleus	16.27	22.2
GSMUA_Achr1P15980_001	Banana	cytosol	27.82	18.94
GSMUA_Achr10P...	Banana	cytosol	21.7	15.58

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr5G06030_001	EnsemblPlants:GSMUA_Achr5P06030_001	EnsemblPlants:GSMUA_Achr5T06030_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SW32	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000294FC33
SEG:seg	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G06030_001]

Coordinates

chr5:-:4477984..4483389

Molecular Weight (calculated)

79364.9 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.397

Length

719 amino acids

Sequence
(BLAST)

001: MAMSLTDAAA EPTIPDPAAP ATRHTYVPRF LRNSYDQFGN SFSSCRFDIP PHRAPSFLQS SPRIPPNRRG SSDRESDGRA SGHRSRRGKA RRERNPFEIA
101: DEFIGLGISD NDASGGGGEG INFDAYDDIP VEVSGLDVPP PATTFAGIDL EEALNQNIQR CRFVKPTPVQ RHAIPILFPT KGPSGGDRTT LPRALILSPT
201: RELSCQILGE SKKFAYQTGV RVVVAYGGTP IGHQLRDLEK GAEILVATPG RLLDLLERAK VSLKEIKYLA LDEADRMLDM GFEPQIRKIV QQMDMPPPGL
301: RQTMLFSATF PQEIQRLASD FLSNYVFLTV GRIGSSTDLI SQRVEYVPDV DKRGRLVDLL HAQRENGIHS KQLLTLVFVE TKRAADSLER WLSKTGFPAT
401: SIHGDKTQPE RERALRSFKS GATPVMVATD VASRGLDVPH VALVINFDLP KDIDDYVHRI GRTGRAGKTG KATAFFNEGN QRLAKSLTEC MEDANQEVPD
501: WLYNHVARPS YGGGRRRGSS TRRFGGRDFR KDIGGGSPAA NSHRGGNVIA DVNYASDGGF DHEPIIGGRD YRTGTGCGNP SVKSYGGNIV TDGNDAWDDH
601: RLDHVAISAT VGGTRSVSSY GGGNDITDGN NANSLLTLSW KLLKFSSFSW FFFFRLGPPG WCQYIFVDSV DNVKVFGMHW SSCFAPCKSK LKSFLQFPNY
701: GDHSIYLVYF RFCLFYILF

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.