CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03709	Soybean	plastid	89.08	85.57
KRG97325	Soybean	endoplasmic reticulum	58.36	57.87
VIT_11s0016g05090.t01	Wine grape	cytosol	59.9	57.26
KRH31589	Soybean	nucleus	58.7	56.95
KRH42811	Soybean	endoplasmic reticulum	60.07	56.87
KRH58901	Soybean	nucleus	59.56	56.84
KRH38030	Soybean	endoplasmic reticulum	59.04	56.63
KRH71800	Soybean	plastid	58.53	56.14
Os06t0602400-01	Rice	nucleus, plasma membrane	44.37	53.72
OQU76674	Sorghum	cytosol	49.15	50.79
Zm00001d036897_P001	Maize	extracellular	50.0	47.72
HORVU7Hr1G084210.1	Barley	cytosol	47.95	46.07
GSMUA_Achr5P06030_001	Banana	nucleus	51.02	41.59
TraesCS7A01G374000.1	Wheat	nucleus	49.32	40.88
KRH47127	Soybean	nucleus	30.2	34.91
KRH44155	Soybean	cytosol	30.03	34.71
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.96	33.19
KRH30661	Soybean	endoplasmic reticulum	30.72	31.86
KRH03228	Soybean	nucleus	32.59	31.73
KRG98124	Soybean	endoplasmic reticulum	30.72	31.52
KRH57127	Soybean	endoplasmic reticulum, nucleus	32.76	31.37
KRH39630	Soybean	nucleus	28.33	30.91
KRH74291	Soybean	nucleus	27.82	30.35
KRG94409	Soybean	cytosol	29.86	29.76
KRH68534	Soybean	cytosol	29.69	29.64
KRH56577	Soybean	nucleus	33.96	25.68
KRG96540	Soybean	cytosol, mitochondrion	33.62	25.65
KRG93254	Soybean	endoplasmic reticulum	33.79	25.52
KRH68277	Soybean	nucleus	33.45	25.06
KRH51212	Soybean	nucleus	29.52	24.68
KRH01937	Soybean	nucleus	29.52	24.5
KRH36905	Soybean	nucleus	33.62	16.91
KRH27757	Soybean	nucleus	31.4	16.62
KRH11875	Soybean	endoplasmic reticulum	33.79	16.49
KRH77709	Soybean	nucleus	31.06	16.49

Protein Annotations

EntrezGene:100817549	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02008253	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_13G168000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1LZZ7	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlants:KRH20283	ProteinID:KRH20283	ProteinID:KRH20283.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233D343	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:28248114..28251357

Molecular Weight (calculated)

63726.5 Da

IEP (calculated)

8.068

GRAVY (calculated)

-0.306

Length

586 amino acids

Sequence
(BLAST)

001: MPSSYASPCV PPRLRRGARP RGGGRGGFSR PRDPSSRLLP ADEARNGDAI NFEAYESVPV EASGKDVPAP VNTFNEADLD EGLKRNIERC KYVKPTPVQR
101: HAIPIVSAGR DLMACAQTGS GKTAAFCFPI ISGILKGRYR SGFSSIPSPG AAIAYPAALI LSPTRELSCQ IRDEANKFAY QTGVKVVVAY GGAPITQQLR
201: LLKKGVDILV ATPGRLVDII ERERVSLTKI KYLALDEADR MLDMGFEHQI RKIVEQMHMP PPGIRQTLLF SATFPNGIQK LASDFLSNYI FLSVGRVGSS
301: TELIVQKIEP VQDMDKRDHL IKHLRRQSVH GFNGKHALTL VFVETKRGAD VLEGWLLRSG FSAVAIHGDK VQMERERALR SFKSGVTPIL VATDVASRGL
401: DIPHVAHVIN FDLPRDIDNY VHRIGRTGRA GKSGLATAFF SDKNSPIAKS LIGLLQEANQ EVPSWLNQYA EGSSSGGGSQ GYGAQRYSSG GSYGGRDFRN
501: VIEAEVENNN CYSTNVNADH AVESYYTADD ASYDIQNSNI DSSFDTLNIA SAGSYNHTDF CELNGAGRVE EDGPLGYASI VATGWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.