CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38030	Soybean	endoplasmic reticulum	94.93	94.93
CDY47978	Canola	plastid	55.16	80.62
KRG97325	Soybean	endoplasmic reticulum	73.65	76.14
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	76.27	74.92
KRH58901	Soybean	nucleus	74.96	74.59
KRH31589	Soybean	nucleus	73.49	74.34
KRH42811	Soybean	endoplasmic reticulum	75.29	74.31
CDX98304	Canola	cytosol, plastid	55.48	73.54
Bra016869.1-P	Field mustard	cytosol, plastid	72.67	72.91
Solyc03g052980.2.1	Tomato	nucleus	73.0	72.88
CDY06034	Canola	cytosol	68.25	72.52
CDX71948	Canola	cytosol	70.54	72.19
PGSC0003DMT400002828	Potato	cytosol	73.0	72.17
CDY14843	Canola	cytosol, plastid	72.18	72.06
CDX98301	Canola	cytosol	70.87	72.05
CDX67749	Canola	cytosol	70.7	71.76
Bra003341.1-P	Field mustard	cytosol	71.52	71.64
AT3G58510.2	Thale cress	cytosol	71.52	71.41
Bra007399.1-P	Field mustard	cytosol	71.03	71.03
AT2G42520.2	Thale cress	nucleus, plastid	73.49	70.93
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.39	70.55
TraesCS4D01G148700.1	Wheat	golgi	69.39	70.55
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.23	70.38
Os11t0599500-00	Rice	nucleus, plasma membrane	71.52	70.14
CDX67752	Canola	cytosol	72.34	69.83
Zm00001d048924_P001	Maize	plasma membrane	68.74	69.08
CDY49232	Canola	cytosol	70.21	68.64
AT3G58570.1	Thale cress	cytosol	72.34	68.42
Bra003343.1-P	Field mustard	cytosol	71.85	68.27
CDX71944	Canola	cytosol	70.21	67.67
KXG28851	Sorghum	cytosol, plastid	69.07	67.52
Bra007402.1-P	Field mustard	cytosol	70.21	66.82
TraesCS4A01G141400.1	Wheat	plastid	69.23	64.48
KRH20283	Soybean	plastid	56.14	58.53
KRH03709	Soybean	plastid	56.14	56.23
Bra014568.1-P	Field mustard	cytosol	55.65	51.05
CDX88990	Canola	cytosol, plastid	43.54	47.67
KRH44155	Soybean	cytosol	30.61	36.88
KRH47127	Soybean	nucleus	30.61	36.88
CDY00570	Canola	nucleus	36.17	36.41
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.35	33.82
KRH30661	Soybean	endoplasmic reticulum	31.26	33.81
KRG98124	Soybean	endoplasmic reticulum	31.42	33.63
KRH03228	Soybean	nucleus	32.9	33.39
KRH57127	Soybean	endoplasmic reticulum, nucleus	32.9	32.84
KRH39630	Soybean	nucleus	27.99	31.84
KRH74291	Soybean	nucleus	27.66	31.47
KRH68534	Soybean	cytosol	28.15	29.3
KRG94409	Soybean	cytosol	28.15	29.25
KRH56577	Soybean	nucleus	34.86	27.48
KRG93254	Soybean	endoplasmic reticulum	34.7	27.32
KRH51212	Soybean	nucleus	30.61	26.68
KRH01937	Soybean	nucleus	30.77	26.63
KRG96540	Soybean	cytosol, mitochondrion	32.9	26.17
KRH68277	Soybean	nucleus	33.06	25.83
KRH36905	Soybean	nucleus	35.35	18.54
KRH11875	Soybean	endoplasmic reticulum	35.52	18.07
KRH77709	Soybean	nucleus	30.61	16.94
KRH27757	Soybean	nucleus	30.61	16.89

Protein Annotations

EntrezGene:100800039	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02001071	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_02G169600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K7K8W7	EnsemblPlants:KRH71800	ProteinID:KRH71800	ProteinID:KRH71800.1	ProteinID:KRH71801.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000233703A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:26174033..26188929

Molecular Weight (calculated)

66318.4 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.402

Length

611 amino acids

Sequence
(BLAST)

001: MRTSWADSAD NSAIGSGITN ASACPSRGAY VPPHLRNRAL SSEVPLAAAS HPAVALGNDR VNHSGPAPHQ GGGYFKPDHG RQQQQGYGSG FQSGGGGGWN
101: GRGVGRDRGR REANPFENVE AEDQSFSEQE NTGINFEAYD DIPVETSGEN VPLPVNSFAE IDLGVALNQN IQRCKYVKPT PVQRYAIPIS LAGRDLMACA
201: QTGSGKTAAF CFPIISGIMR EQYAQRPRVA RTAYPLALIL SPTRELSCQI HDEAKKFSYQ TGVKVVVAYG GAPITQQLRE LERGVDILVA TPGRLVDLLE
301: RARLSLQMIR YLALDEADRM LDMGFEPQIR KIVEQMDMPP PGMRQTLLFS ATFPKEIQAL ASDFLSRYVF LAVGRVGSST DLIAQRVEYV LESDKRSHLM
401: DLLHAQRETG VNGKQGLTLV FVETKKGADA LEHCLCVNGF PAASIHGDRT QQERELALRS FKTGNTPILV ATDVAARGLD IPRVAHVVNF DLPNDIDDYV
501: HRIGRTGRAG KMGLATAFFN EGNFNMAKPL ADLMQEANQE VPAWLSRYAA RATYSGGNRN RKSGGSRFGG RDFRKEGSFN KATDYYGGGT GGGYCGNYGG
601: GYGQGVPSAW D

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.