CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98304	Canola	cytosol, plastid	88.04	79.83
Bra016869.1-P	Field mustard	cytosol, plastid	99.76	68.47
CDY14843	Canola	cytosol, plastid	99.04	67.65
AT2G42520.2	Thale cress	nucleus, plastid	96.17	63.51
CDX71948	Canola	cytosol	90.19	63.15
CDY06034	Canola	cytosol	85.65	62.26
CDX67749	Canola	cytosol	88.28	61.3
CDX98301	Canola	cytosol	87.8	61.06
CDY49232	Canola	cytosol	88.52	59.2
CDX67752	Canola	cytosol	88.52	58.45
CDX71944	Canola	cytosol	88.28	58.2
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	84.21	56.59
Solyc03g052980.2.1	Tomato	nucleus	82.3	56.21
PGSC0003DMT400002828	Potato	cytosol	82.3	55.66
TraesCS4B01G126000.1	Wheat	cytosol, plastid	79.9	55.57
TraesCS4D01G148700.1	Wheat	golgi	79.9	55.57
HORVU4Hr1G031280.1	Barley	cytosol, plastid	79.9	55.57
KRH38030	Soybean	endoplasmic reticulum	81.1	55.48
KRH71800	Soybean	plastid	80.62	55.16
Zm00001d048924_P001	Maize	plasma membrane	80.14	55.1
Os11t0599500-00	Rice	nucleus, plasma membrane	82.06	55.06
KXG28851	Sorghum	cytosol, plastid	80.14	53.6
CDX88990	Canola	cytosol, plastid	68.9	51.61
TraesCS4A01G141400.1	Wheat	plastid	79.67	50.76
CDX84672	Canola	cytosol	36.36	34.0
CDY02459	Canola	cytosol	37.56	31.46
CDY10596	Canola	nucleus	37.56	31.46
CDY00570	Canola	nucleus	43.06	29.65
CDY48128	Canola	cytosol	41.87	29.46
CDY16735	Canola	cytosol	41.63	29.44
CDY65864	Canola	nucleus	36.6	28.65
CDY66221	Canola	nucleus	36.6	28.54
CDY41747	Canola	nucleus	36.84	28.52
CDX83333	Canola	nucleus	40.67	26.69
CDX87315	Canola	cytosol	33.01	26.64
CDY38671	Canola	cytosol	33.01	26.59
CDY61276	Canola	cytosol	33.01	26.59
CDX91036	Canola	cytosol	43.3	26.46
CDY39973	Canola	cytosol	32.78	26.45
CDY53786	Canola	nucleus	37.32	26.44
CDX67949	Canola	cytosol	34.21	26.29
CDY37696	Canola	nucleus	37.08	26.27
CDX91943	Canola	cytosol	40.91	25.71
CDY28671	Canola	cytosol	40.43	25.49
CDX74304	Canola	cytosol	40.91	24.85
CDX80096	Canola	cytosol	42.11	24.18
CDX95719	Canola	cytosol	42.34	24.08
CDY37796	Canola	cytosol	42.11	23.98
CDX85591	Canola	cytosol	43.06	23.94
CDX79541	Canola	nucleus	35.89	23.85
CDY72529	Canola	cytosol	35.41	23.76
CDX84112	Canola	nucleus	14.35	20.0
CDX74101	Canola	cytosol	40.67	19.41
CDY08048	Canola	nucleus	40.67	19.32
CDX79384	Canola	cytosol	17.94	19.23
CDY44720	Canola	nucleus	38.04	18.4
CDY41597	Canola	nucleus	30.38	16.43
CDY31513	Canola	nucleus	36.84	13.92
CDX91037	Canola	cytosol	0.0	0.0
CDX91039	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078IFN1	UniProt:A0A078IFN1	EnsemblPlants:CDY47978	ProteinID:CDY47978
ProteinID:CDY47978.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00088604001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EF47C1	SEG:seg

Description

BnaA04g24560DBnaA04g24560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFN1]

Coordinates

chrLK032747:+:68703..70695

Molecular Weight (calculated)

45450.1 Da

IEP (calculated)

9.393

GRAVY (calculated)

-0.319

Length

418 amino acids

Sequence
(BLAST)

001: MACAQTGSGK TAAFCFPIIS GIMKDQHVVQ RPRGSRTVYP LAVILSPTRE LASQIHDEAK KFSYQTGVKV VVAYGGTPIN QQLRELERGV DILVATPGRL
101: NDLLERARVS MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TLLFSATFPR EIQRLAADFL ANYIFLAVGR VGSSTDLIVQ RVEFVLDSDK
201: RSHLMDLLHA QRENGMQSLT LVFVETKRGA DSLENWLCIN GFPATSIHGD RSQQEREVAL KSFKSGRTPI LVATDVAARG LDIPHVAHVV NFDLPNDIDD
301: YVHRIGRTGR AGKSGLATAF FNDGNTSMAR SLSELMQEAN QEVPAWLSRY ASRSSFGGGK NKRSGGRFGG RDFRREGSYS RGGGGGGGYY GGGGGGGYGG
401: GYGAPSGGYG GETPSAWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.