Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38671 | Canola | cytosol | 85.66 | 89.79 |
| Bra003568.1-P | Field mustard | cytosol | 97.06 | 89.34 |
| CDY39973 | Canola | cytosol | 84.93 | 89.19 |
| CDY61276 | Canola | cytosol | 84.93 | 89.02 |
| CDX87315 | Canola | cytosol | 84.74 | 89.0 |
| AT4G33370.1 | Thale cress | cytosol | 81.43 | 81.73 |
| Os02t0150100-02 | Rice | cytosol | 68.01 | 80.43 |
| AT5G51280.1 | Thale cress | cytosol | 87.32 | 80.37 |
| CDX79384 | Canola | cytosol | 56.25 | 78.46 |
| KRH68534 | Soybean | cytosol | 83.27 | 77.17 |
| VIT_09s0002g08120.t01 | Wine grape | cytosol | 83.27 | 77.17 |
| KRG94409 | Soybean | cytosol | 83.09 | 76.87 |
| PGSC0003DMT400036663 | Potato | cytosol | 82.54 | 76.23 |
| PGSC0003DMT400073340 | Potato | cytosol | 81.8 | 75.55 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 82.54 | 75.46 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 81.99 | 74.96 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 71.88 | 71.48 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 75.92 | 67.26 |
| HORVU5Hr1G048040.1 | Barley | plastid | 70.4 | 66.96 |
| Zm00001d047502_P001 | Maize | extracellular | 75.37 | 66.34 |
| EER92293 | Sorghum | cytosol | 75.18 | 66.18 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 72.98 | 65.3 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 72.79 | 65.02 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 69.3 | 64.67 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 75.74 | 64.58 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 64.34 | 64.58 |
| Os06t0697200-00 | Rice | cytosol | 71.88 | 63.17 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 76.1 | 62.92 |
| CDX84672 | Canola | cytosol | 28.31 | 34.45 |
| CDY47978 | Canola | plastid | 26.29 | 34.21 |
| CDY10596 | Canola | nucleus | 30.7 | 33.47 |
| CDY02459 | Canola | cytosol | 30.51 | 33.27 |
| CDX98304 | Canola | cytosol, plastid | 26.29 | 31.02 |
| CDY16735 | Canola | cytosol | 32.72 | 30.12 |
| CDY41747 | Canola | nucleus | 29.78 | 30.0 |
| CDY48128 | Canola | cytosol | 32.72 | 29.97 |
| CDY65864 | Canola | nucleus | 29.23 | 29.78 |
| CDY66221 | Canola | nucleus | 29.23 | 29.66 |
| CDX98301 | Canola | cytosol | 31.43 | 28.45 |
| CDY06034 | Canola | cytosol | 29.78 | 28.17 |
| CDX83333 | Canola | nucleus | 32.9 | 28.1 |
| CDX67749 | Canola | cytosol | 31.07 | 28.07 |
| CDX71948 | Canola | cytosol | 30.51 | 27.81 |
| CDY14843 | Canola | cytosol, plastid | 31.25 | 27.78 |
| CDY53786 | Canola | nucleus | 29.96 | 27.63 |
| CDY49232 | Canola | cytosol | 31.62 | 27.52 |
| CDY37696 | Canola | nucleus | 29.6 | 27.29 |
| CDX71944 | Canola | cytosol | 31.62 | 27.13 |
| CDX67752 | Canola | cytosol | 31.43 | 27.01 |
| CDX84112 | Canola | nucleus | 14.89 | 27.0 |
| CDY72529 | Canola | cytosol | 30.88 | 26.97 |
| CDY37796 | Canola | cytosol | 34.01 | 25.2 |
| CDX80096 | Canola | cytosol | 33.64 | 25.14 |
| CDX95719 | Canola | cytosol | 33.64 | 24.9 |
| CDY28671 | Canola | cytosol | 30.15 | 24.74 |
| CDX91943 | Canola | cytosol | 30.15 | 24.66 |
| CDX79541 | Canola | nucleus | 28.49 | 24.64 |
| CDX74304 | Canola | cytosol | 30.15 | 23.84 |
| CDX91036 | Canola | cytosol | 29.04 | 23.1 |
| CDX88990 | Canola | cytosol, plastid | 22.24 | 21.68 |
| CDX85591 | Canola | cytosol | 29.41 | 21.28 |
| CDY44720 | Canola | nucleus | 31.07 | 19.56 |
| CDY41597 | Canola | nucleus | 27.57 | 19.4 |
| CDY08048 | Canola | nucleus | 30.7 | 18.98 |
| CDX74101 | Canola | cytosol | 30.51 | 18.95 |
| CDY31513 | Canola | nucleus | 33.09 | 16.27 |
| CDY00570 | Canola | nucleus | 15.62 | 14.0 |
| CDX91037 | Canola | cytosol | 2.21 | 6.86 |
| CDX91039 | Canola | cytosol | 2.21 | 6.86 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078BVY6 | EnsemblPlants:CDX67949 | ProteinID:CDX67949 | ProteinID:CDX67949.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00099160001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF542 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE5142 | : | : | : | : | : |
Description
BnaA07g19890D
Coordinates
chrLK031787:-:3053759..3055534
Molecular Weight (calculated)
60515.7 Da
IEP (calculated)
7.474
GRAVY (calculated)
-0.239
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MMELDDDYVE YVPVAKRRAM EAQKILQRKG KKEMMDRLSE KKTLMSVREL AKGITYTEPM TTGWEPPSHV RNMSRKQMDS IRKQWHVTVS GEEVPPPIKN
101: FEDMMLERPV LDTLKDKGIV QPTPIQVQCL PVALSGRDMI GIASTGSGKT LVFLLPLIRI ALMEEKRRRV GPGEGPIGLI ICPSRELARQ TYEVVEQFVG
201: PLVEAGYPPL KSLLCIGGVD MRSQLDVVKR GVHIVVATPG RLKDLFAKKK MNLDACRYLT LDEADRLVDL GFEDDIREVF DHFKSQRQTL FFSATMPAKI
301: QVFARSALVK PVTVNVGRAG AANLDVIQEV EYVKQEAKIV YLLECLQKTT PPVLIFCENK ADVDDVHEYL LLKGVEAVAI HGGKDQEDRE YAISSFKAGG
401: KDVLVATDVA SKGLDFSDVQ HVINYDMPAE IENYVHRIGR TGRCGKTGIA TTFINKNQSD TTLLDLKHLL QEAKQRIPPV LAELNDPMEE AESIANASGV
501: KGCAYCGGLG HRIGVCPKLE QQKSVVISNS RKDYFGAGGY RGEI
101: FEDMMLERPV LDTLKDKGIV QPTPIQVQCL PVALSGRDMI GIASTGSGKT LVFLLPLIRI ALMEEKRRRV GPGEGPIGLI ICPSRELARQ TYEVVEQFVG
201: PLVEAGYPPL KSLLCIGGVD MRSQLDVVKR GVHIVVATPG RLKDLFAKKK MNLDACRYLT LDEADRLVDL GFEDDIREVF DHFKSQRQTL FFSATMPAKI
301: QVFARSALVK PVTVNVGRAG AANLDVIQEV EYVKQEAKIV YLLECLQKTT PPVLIFCENK ADVDDVHEYL LLKGVEAVAI HGGKDQEDRE YAISSFKAGG
401: KDVLVATDVA SKGLDFSDVQ HVINYDMPAE IENYVHRIGR TGRCGKTGIA TTFINKNQSD TTLLDLKHLL QEAKQRIPPV LAELNDPMEE AESIANASGV
501: KGCAYCGGLG HRIGVCPKLE QQKSVVISNS RKDYFGAGGY RGEI
001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
Arabidopsis Description
RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.