Factsheet for Bra003568.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67949	Canola	cytosol	89.34	97.06
Bra008471.1-P	Field mustard	cytosol	85.11	89.34
Bra018133.1-P	Field mustard	cytosol	88.83	89.29
Bra035177.1-P	Field mustard	cytosol	87.99	88.44
AT5G51280.1	Thale cress	cytosol	86.63	86.63
CDX79384	Canola	cytosol	56.85	86.15
AT4G33370.1	Thale cress	cytosol	75.8	82.66
VIT_09s0002g08120.t01	Wine grape	cytosol	81.22	81.77
KRH68534	Soybean	cytosol	81.05	81.6
KRG94409	Soybean	cytosol	80.88	81.29
PGSC0003DMT400036663	Potato	cytosol	80.37	80.65
Os02t0150100-02	Rice	cytosol	62.61	80.43
Solyc03g117440.2.1	Tomato	cytosol, nucleus	80.54	80.0
PGSC0003DMT400073340	Potato	cytosol	79.36	79.63
Solyc06g068280.2.1	Tomato	extracellular, nucleus	79.53	78.99
GSMUA_Achr2P09160_001	Banana	cytosol	69.88	75.5
TraesCS3B01G141300.1	Wheat	cytosol	74.11	71.34
Zm00001d047502_P001	Maize	extracellular	73.43	70.23
HORVU5Hr1G048040.1	Barley	plastid	67.85	70.1
EER92293	Sorghum	cytosol	73.27	70.06
HORVU3Hr1G022710.1	Barley	mitochondrion	73.94	68.5
TraesCS5D01G159000.1	Wheat	cytosol	69.88	67.93
TraesCS5A01G153700.1	Wheat	cytosol	66.67	67.58
TraesCS5B01G152200.1	Wheat	cytosol	69.54	67.49
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	74.28	66.72
Os06t0697200-00	Rice	cytosol	69.2	66.07
GSMUA_Achr1P13820_001	Banana	mitochondrion	60.24	65.68
Bra030884.1-P	Field mustard	nucleus	28.26	33.47
Bra035857.1-P	Field mustard	cytosol	30.29	30.29
Bra035518.1-P	Field mustard	nucleus	27.07	29.85
Bra023227.1-P	Field mustard	nucleus	27.24	29.65
Bra000447.1-P	Field mustard	cytosol	32.15	28.23
Bra003341.1-P	Field mustard	cytosol	29.1	28.2
Bra016869.1-P	Field mustard	cytosol, plastid	28.93	28.08
Bra007399.1-P	Field mustard	cytosol	28.6	27.66
Bra007402.1-P	Field mustard	cytosol	29.27	26.95
Bra040699.1-P	Field mustard	cytosol	27.75	26.93
Bra003343.1-P	Field mustard	cytosol	29.1	26.75
Bra004464.1-P	Field mustard	cytosol	32.99	26.64
Bra001004.1-P	Field mustard	cytosol	27.75	25.79
Bra021872.1-P	Field mustard	nucleus	28.6	25.64
Bra023478.1-P	Field mustard	cytosol	26.9	23.52
Bra014568.1-P	Field mustard	cytosol	26.4	23.42
Bra029779.1-P	Field mustard	nucleus	30.29	20.18
Bra025856.1-P	Field mustard	nucleus	32.66	16.48
Bra001200.1-P	Field mustard	cytosol	28.26	15.87

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra003568	EnsemblPlants:Bra003568.1	EnsemblPlants:Bra003568.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CH85
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI00025412FF	SEG:seg	:	:	:	:

Description

AT5G51280 (E=7e-280) | DEAD-box protein abstrakt, putative

Coordinates

chrA07:-:13830004..13831779

Molecular Weight (calculated)

65651.8 Da

IEP (calculated)

6.741

GRAVY (calculated)

-0.288

Length

591 amino acids

Sequence
(BLAST)

001: MMELDDDYVE YVPVAKRRAM EAQKILQRKG KVEEEEEAEK EKKKVAESSS KPSLLLQATQ LKRDAPEVTA TDQIILQEKE MMDRLSEKKT LMSVRELAKG
101: ITYTEPMTTG WEPPSHVRNM SRKQMDSIRK QWHVTVSGEE VPPPIKSFED MMFERPVLDT LKDKGIVQPT PIQVQGLPVA LSGRDMIGIA STGSGKTLVF
201: VLPMIRIALM EEKRRRIGPG EGPIGLIICP SRELARQTYE VVEQFVGPLV EAGYPPLKSL LCIGGVDMRS QLDVVKRGVH IVVATPGRLK DLLAKKKMNL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPAKIQVF ARSALVKPVT VNVGRVGAAN LDVIHGGEYV KQEAKIVYLL ECLQKTTPPV
401: LIFCENKADV DDVHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGGKDV LVATDVASKG LDFPDVQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATIF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAES IANASGVKGC AYCGGLGHRI GVCPKLEQQK SVVISNSRKD YFGSGGYRGE I

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.