Factsheet for Bra030884.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02459	Canola	cytosol	99.8	99.8
AT1G55150.2	Thale cress	cytosol	91.38	86.69
Solyc12g044860.1.1	Tomato	nucleus	80.96	84.34
PGSC0003DMT400083878	Potato	cytosol	84.17	83.83
GSMUA_Achr10P...	Banana	cytosol	82.97	83.3
KRH47127	Soybean	nucleus	84.57	83.23
KXG31614	Sorghum	cytosol	81.96	83.13
KRH44155	Soybean	cytosol	83.77	82.45
Os01t0197200-01	Rice	plasma membrane	81.56	82.39
VIT_09s0002g02100.t01	Wine grape	cytosol	83.77	81.17
TraesCS3A01G103700.1	Wheat	cytosol	80.36	80.85
TraesCS3D01G106000.1	Wheat	cytosol	80.36	80.85
TraesCS3B01G121100.1	Wheat	cytosol	78.96	80.74
KRH48684	Soybean	cytosol, endoplasmic reticulum	72.14	75.63
Zm00001d039452_P002	Maize	cytosol	81.36	73.42
HORVU3Hr1G018850.7	Barley	cytosol	76.95	70.2
Bra035857.1-P	Field mustard	cytosol	65.93	55.67
Bra040699.1-P	Field mustard	cytosol	45.89	37.6
Bra001004.1-P	Field mustard	cytosol	46.49	36.48
Bra035518.1-P	Field mustard	nucleus	39.08	36.38
Bra023227.1-P	Field mustard	nucleus	39.28	36.1
Bra023478.1-P	Field mustard	cytosol	44.69	32.99
Bra000447.1-P	Field mustard	cytosol	41.08	30.46
Bra007399.1-P	Field mustard	cytosol	35.67	29.13
Bra003341.1-P	Field mustard	cytosol	35.47	29.02
Bra016869.1-P	Field mustard	cytosol, plastid	35.27	28.9
Bra008471.1-P	Field mustard	cytosol	32.06	28.42
Bra004464.1-P	Field mustard	cytosol	41.68	28.42
Bra018133.1-P	Field mustard	cytosol	33.47	28.4
Bra003568.1-P	Field mustard	cytosol	33.47	28.26
Bra035177.1-P	Field mustard	cytosol	33.27	28.23
Bra007402.1-P	Field mustard	cytosol	35.67	27.73
Bra003343.1-P	Field mustard	cytosol	35.67	27.68
Bra021872.1-P	Field mustard	nucleus	35.27	26.71
Bra014568.1-P	Field mustard	cytosol	33.47	25.08
Bra029779.1-P	Field mustard	nucleus	40.28	22.66
Bra001200.1-P	Field mustard	cytosol	46.49	22.05
Bra025856.1-P	Field mustard	nucleus	40.28	17.16

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra030884	EnsemblPlants:Bra030884.1	EnsemblPlants:Bra030884.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4EQ13	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002547249	SEG:seg

Description

AT1G55150 (E=1e-255) | DEAD box RNA helicase, putative (RH20)

Coordinates

chrA08:-:536433..539789

Molecular Weight (calculated)

55201.8 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.462

Length

499 amino acids

Sequence
(BLAST)

001: MSRYDSRTGD STSYRDRRSD TGFGGASGYG SSASKRESSS VGDESPKKPD LDGLTPFEKN FYVESPSVAA MTEAEVEEYR KKREITVEGR DIPKPVKSFR
101: DVGFPDYVLE EVKKAGFTEP TPIQSQGWPM ALKGRDLIGI AETGSGKTLS YLLPAIVHVN AQPILAPGDG PIVLVLAPTR ELAVQIQQEA SKFGSSSKIK
201: STCIYGGVPK GPQVRDLQKG VEIVIATPGR LIDMMESNNT NLRRVTYLVL DEADRMLDMG FDPQIRKIVS HIRPDRQTLY WSATWPKEVE QLSKKFLYNP
301: YKVIIGSSDL KANRAIRQIV DVISESQKYN KLVKLLEDIM DGSRILVFLD TKKGCDQITR QLRMDGWPAL SIHGDKSQAE RDWVLSEFRS GKSPIMTATD
401: VAARGLDVKD VKYVINYDFP GSLEDYVHRI GRTGRAGAKG TAYSFFTAAN ARFAKELVSI LEEAGQKVSH ELASMGRSTA PPPPGLGGFR DRGSRRAWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.