Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65864 | Canola | nucleus | 96.83 | 97.19 |
| Bra023227.1-P | Field mustard | nucleus | 97.95 | 96.69 |
| CDY41747 | Canola | nucleus | 89.93 | 89.26 |
| AT1G31970.1 | Thale cress | cytosol | 88.81 | 88.64 |
| CDX84112 | Canola | nucleus | 47.95 | 85.67 |
| EER96257 | Sorghum | cytosol | 65.11 | 68.16 |
| Os07t0301200-01 | Rice | cytosol | 64.93 | 67.97 |
| Zm00001d019449_P004 | Maize | nucleus | 63.99 | 67.52 |
| KRH74291 | Soybean | nucleus | 66.79 | 66.67 |
| KRH39630 | Soybean | nucleus | 66.79 | 66.67 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 64.93 | 65.54 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 64.93 | 65.17 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 64.37 | 65.09 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 64.93 | 65.05 |
| Solyc08g076200.2.1 | Tomato | nucleus | 64.18 | 62.21 |
| PGSC0003DMT400024026 | Potato | nucleus | 64.37 | 61.94 |
| GSMUA_Achr11P... | Banana | nucleus | 65.49 | 60.83 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 67.16 | 57.32 |
| CDY02459 | Canola | cytosol | 36.57 | 39.28 |
| CDY10596 | Canola | nucleus | 36.38 | 39.08 |
| CDY47978 | Canola | plastid | 28.54 | 36.6 |
| CDX98304 | Canola | cytosol, plastid | 28.54 | 33.19 |
| CDY16735 | Canola | cytosol | 36.57 | 33.16 |
| CDX84672 | Canola | cytosol | 27.43 | 32.89 |
| CDY48128 | Canola | cytosol | 36.38 | 32.83 |
| CDY06034 | Canola | cytosol | 32.28 | 30.09 |
| CDX67949 | Canola | cytosol | 29.66 | 29.23 |
| CDX67749 | Canola | cytosol | 32.65 | 29.07 |
| CDX71948 | Canola | cytosol | 32.28 | 28.98 |
| CDX98301 | Canola | cytosol | 32.28 | 28.79 |
| CDY14843 | Canola | cytosol, plastid | 32.84 | 28.76 |
| CDY38671 | Canola | cytosol | 27.8 | 28.71 |
| CDX87315 | Canola | cytosol | 27.61 | 28.57 |
| CDY61276 | Canola | cytosol | 27.61 | 28.52 |
| CDY39973 | Canola | cytosol | 27.43 | 28.38 |
| CDY49232 | Canola | cytosol | 32.28 | 27.68 |
| CDX71944 | Canola | cytosol | 32.46 | 27.44 |
| CDX91943 | Canola | cytosol | 33.96 | 27.37 |
| CDX67752 | Canola | cytosol | 32.28 | 27.33 |
| CDY28671 | Canola | cytosol | 33.77 | 27.3 |
| CDX83333 | Canola | nucleus | 32.28 | 27.16 |
| CDY53786 | Canola | nucleus | 29.29 | 26.61 |
| CDX91036 | Canola | cytosol | 33.58 | 26.32 |
| CDX74304 | Canola | cytosol | 33.77 | 26.31 |
| CDY37696 | Canola | nucleus | 28.73 | 26.1 |
| CDY72529 | Canola | cytosol | 28.92 | 24.88 |
| CDX85591 | Canola | cytosol | 33.96 | 24.2 |
| CDX80096 | Canola | cytosol | 32.28 | 23.76 |
| CDX95719 | Canola | cytosol | 32.46 | 23.67 |
| CDX88990 | Canola | cytosol, plastid | 24.63 | 23.66 |
| CDY37796 | Canola | cytosol | 32.28 | 23.57 |
| CDX79541 | Canola | nucleus | 27.61 | 23.53 |
| CDX79384 | Canola | cytosol | 15.3 | 21.03 |
| CDX74101 | Canola | cytosol | 34.14 | 20.89 |
| CDY08048 | Canola | nucleus | 34.14 | 20.8 |
| CDY44720 | Canola | nucleus | 30.41 | 18.87 |
| CDY41597 | Canola | nucleus | 25.93 | 17.98 |
| CDY31513 | Canola | nucleus | 30.22 | 14.65 |
| CDY00570 | Canola | nucleus | 16.42 | 14.5 |
| CDX91039 | Canola | cytosol | 1.87 | 5.71 |
| CDX91037 | Canola | cytosol | 1.87 | 5.71 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078JK79 | UniProt:A0A078JK79 | EnsemblPlants:CDY66221 | ProteinID:CDY66221 |
| ProteinID:CDY66221.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00052327001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE7A78 | SEG:seg | : | : | : |
Description
BnaCnng50040DBnaCnng50040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK79]
Coordinates
chrLK035150:+:11606..14538
Molecular Weight (calculated)
59201.2 Da
IEP (calculated)
9.050
GRAVY (calculated)
-0.482
Length
536 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKKQELPV SGEPLAAVES PMTDTIEKKK KKKKSKKNKH AEVEVPQEVV DKGEELSSKE KKKKRKREEK EMEKEEESEV PEKKLEPEAS NGGGGGESEQ
101: KVVVTGKGAE EAKYAALTSF AESKLPANVL DCCKTFQKPS PIQSHSWPFL LDGRDLIGIA KTGSGKTLAF GIPAIMHMLK KNKSGKGTRN PTCLVLSPTR
201: ELAVQISDVL SEAGEPCGLK SICVYGGSSK RPQINAIRSG VDIVIGTPGR LRDLIESNEL RLSDVSFVVL DEADRMLDMG FEEPVRFILS KTNKVRQMVM
301: FSATWPIDVH KLAQEFMDPN PVKIVIGSED LAANHDVMQI VEVLDDRARD QRLIALLEKY HKSQKNRVLV FALYKVEADR LERFLQQRGW KAVSIHGNKA
401: QSERTRSLAL FKEGSCPLLV ATDVAARGLD IPDVEVVINY SFPLTTEDYV HRIGRTGRAG KKGVAHTFFT QQNKGLAGEL VNVLREAGQV VPTDLTKFGT
501: HVKKKESKLY GAHFKEIAAD APKATKITFA DSDDED
101: KVVVTGKGAE EAKYAALTSF AESKLPANVL DCCKTFQKPS PIQSHSWPFL LDGRDLIGIA KTGSGKTLAF GIPAIMHMLK KNKSGKGTRN PTCLVLSPTR
201: ELAVQISDVL SEAGEPCGLK SICVYGGSSK RPQINAIRSG VDIVIGTPGR LRDLIESNEL RLSDVSFVVL DEADRMLDMG FEEPVRFILS KTNKVRQMVM
301: FSATWPIDVH KLAQEFMDPN PVKIVIGSED LAANHDVMQI VEVLDDRARD QRLIALLEKY HKSQKNRVLV FALYKVEADR LERFLQQRGW KAVSIHGNKA
401: QSERTRSLAL FKEGSCPLLV ATDVAARGLD IPDVEVVINY SFPLTTEDYV HRIGRTGRAG KKGVAHTFFT QQNKGLAGEL VNVLREAGQV VPTDLTKFGT
501: HVKKKESKLY GAHFKEIAAD APKATKITFA DSDDED
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Arabidopsis Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.