CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47978	Canola	plastid	67.65	99.04
Bra016869.1-P	Field mustard	cytosol, plastid	95.75	96.22
AT2G42520.2	Thale cress	nucleus, plastid	92.97	89.89
CDY06034	Canola	cytosol	78.76	83.83
CDX71948	Canola	cytosol	81.54	83.58
CDX98301	Canola	cytosol	80.07	81.53
CDX67749	Canola	cytosol	79.9	81.23
CDX98304	Canola	cytosol, plastid	60.62	80.48
CDX67752	Canola	cytosol	80.07	77.41
CDY49232	Canola	cytosol	78.92	77.28
CDX71944	Canola	cytosol	78.59	75.87
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	76.8	75.56
Solyc03g052980.2.1	Tomato	nucleus	74.84	74.84
PGSC0003DMT400002828	Potato	cytosol	75.16	74.43
KRH38030	Soybean	endoplasmic reticulum	73.04	73.16
KRH71800	Soybean	plastid	72.06	72.18
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.61	70.88
TraesCS4D01G148700.1	Wheat	golgi	69.44	70.72
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.44	70.72
Os11t0599500-00	Rice	nucleus, plasma membrane	70.75	69.5
Zm00001d048924_P001	Maize	plasma membrane	68.63	69.08
KXG28851	Sorghum	cytosol, plastid	69.28	67.84
TraesCS4A01G141400.1	Wheat	plastid	69.28	64.63
CDX88990	Canola	cytosol, plastid	46.9	51.43
CDY00570	Canola	nucleus	38.73	39.04
CDX84672	Canola	cytosol	27.94	38.26
CDY10596	Canola	nucleus	28.76	35.27
CDY02459	Canola	cytosol	28.76	35.27
CDY16735	Canola	cytosol	33.17	34.35
CDY48128	Canola	cytosol	33.33	34.34
CDY41747	Canola	nucleus	29.9	33.89
CDY65864	Canola	nucleus	28.92	33.15
CDY66221	Canola	nucleus	28.76	32.84
CDX87315	Canola	cytosol	26.8	31.66
CDY61276	Canola	cytosol	26.8	31.6
CDY38671	Canola	cytosol	26.8	31.6
CDY39973	Canola	cytosol	26.63	31.47
CDX67949	Canola	cytosol	27.78	31.25
CDX83333	Canola	nucleus	32.52	31.24
CDY53786	Canola	nucleus	29.58	30.68
CDX91036	Canola	cytosol	33.82	30.26
CDX91943	Canola	cytosol	32.84	30.23
CDY37696	Canola	nucleus	29.09	30.17
CDY28671	Canola	cytosol	32.68	30.17
CDX84112	Canola	nucleus	14.54	29.67
CDX74304	Canola	cytosol	32.68	29.07
CDX95719	Canola	cytosol	33.99	28.3
CDX80096	Canola	cytosol	33.66	28.3
CDY37796	Canola	cytosol	33.66	28.07
CDX79541	Canola	nucleus	28.43	27.66
CDX85591	Canola	cytosol	33.66	27.39
CDY72529	Canola	cytosol	27.12	26.65
CDX79384	Canola	cytosol	15.2	23.85
CDX74101	Canola	cytosol	31.7	22.15
CDY08048	Canola	nucleus	31.7	22.05
CDY44720	Canola	nucleus	30.56	21.64
CDY41597	Canola	nucleus	25.16	19.92
CDY31513	Canola	nucleus	30.56	16.91
CDX91039	Canola	cytosol	3.1	10.86
CDX91037	Canola	cytosol	3.1	10.86

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FR95	UniProt:A0A078FR95	EnsemblPlants:CDY14843	ProteinID:CDY14843
ProteinID:CDY14843.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00084725001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EF22D2	SEG:seg	:	:	:

Description

BnaC04g48400DBnaC04g48400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR95]

Coordinates

chrLK032047:+:651727..654646

Molecular Weight (calculated)

66427.1 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.501

Length

612 amino acids

Sequence
(BLAST)

001: MSESWADVVD SENNTASGST TQNSHNTASG STKPSRPAYV PPHLRNKQPS SDPVPPLPAN DRVGYNGPPS ASRWAPPGGY RADAGRPRGT GGGWNNRSGG
101: WDRREREVNP FENADAEPEP AFTELDNTGI NFDAYEDIPI ETSGDNVPPS VNTFAEIDLG EALNLNIRRC KYVKPTPVQR HAIPILLAGR DLMACAQTGS
201: GKTAAFCFPI ISGIMKDQHV LQRPRGSRTV YPLAVILSPT RELASQIHDE AKKFSYQTGV KVVVAYGGTP INQQLRELER GVDILVATPG RLNDLLERAR
301: VSMQMIRFLA LDEADRMLDM GFEPQIRKIV EQMDMPPRGV RQTLLFSATF PREIQRLAAD FLANYIFLAV GRVGSSTDLI VQRVEFVLDS DKRSHLMDLL
401: HAQRENGIQG KQALTLVFVE TKRGADSLEN WLCINGFPAT SIHGDRSQQE REVALKSFKS GRTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI
501: GRTGRAGKSG LATAFFNDGN TSMARSLSEL MQEANQEVPA WLSRYASRSS FGGGKNKRSG GRFGGRDFRR EGSYSRGGGG GGYYGGGGGG GYGGGYGAPS
601: GGYGGETPSA WD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.