Factsheet for Zm00001d048924_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22065420
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28851	Sorghum	cytosol, plastid	92.93	90.4
TraesCS4B01G126000.1	Wheat	cytosol, plastid	82.4	83.36
HORVU4Hr1G031280.1	Barley	cytosol, plastid	82.24	83.19
TraesCS4D01G148700.1	Wheat	golgi	82.07	83.03
Os11t0599500-00	Rice	nucleus, plasma membrane	85.03	82.99
CDY47978	Canola	plastid	55.1	80.14
TraesCS4A01G141400.1	Wheat	plastid	82.57	76.52
KRH58901	Soybean	nucleus	75.16	74.43
VIT_13s0156g00070.t01	Wine grape	cytosol	74.67	73.58
KRH42811	Soybean	endoplasmic reticulum	74.67	73.34
KRG97325	Soybean	endoplasmic reticulum	71.22	73.27
KRH31589	Soybean	nucleus	72.2	72.68
PGSC0003DMT400010921	Potato	cytosol	71.22	71.93
CDX98304	Canola	cytosol, plastid	54.44	71.8
PGSC0003DMT400081851	Potato	cytosol	70.39	70.86
CDY06034	Canola	cytosol	66.94	70.78
Solyc01g005960.2.1	Tomato	plastid	69.9	70.36
Solyc03g052980.2.1	Tomato	nucleus	70.39	69.93
KRH38030	Soybean	endoplasmic reticulum	70.07	69.72
CDX71948	Canola	cytosol	67.93	69.18
AT3G58510.2	Thale cress	cytosol	69.57	69.12
PGSC0003DMT400002828	Potato	cytosol	70.23	69.09
CDX67749	Canola	cytosol	68.09	68.77
KRH71800	Soybean	plastid	69.08	68.74
Bra016869.1-P	Field mustard	cytosol, plastid	68.75	68.64
CDY14843	Canola	cytosol, plastid	69.08	68.63
CDX98301	Canola	cytosol	67.6	68.39
Bra007399.1-P	Field mustard	cytosol	68.26	67.92
Bra003341.1-P	Field mustard	cytosol	68.09	67.87
AT2G42520.2	Thale cress	nucleus, plastid	69.41	66.67
Zm00001d007755_P001	Maize	plastid	69.74	65.53
CDY49232	Canola	cytosol	67.27	65.44
CDX67752	Canola	cytosol	67.76	65.09
CDX71944	Canola	cytosol	67.27	64.51
Zm00001d007757_P004	Maize	plastid	70.23	64.5
Bra003343.1-P	Field mustard	cytosol	67.76	64.07
Bra007402.1-P	Field mustard	cytosol	67.43	63.86
AT3G58570.1	Thale cress	cytosol	67.43	63.47
Bra014568.1-P	Field mustard	cytosol	55.76	50.9
Zm00001d036897_P001	Maize	extracellular	50.66	50.16
CDX88990	Canola	cytosol, plastid	43.59	47.49
CDY00570	Canola	nucleus	35.2	35.26
Zm00001d019449_P004	Maize	nucleus	27.8	33.27
Zm00001d039452_P002	Maize	cytosol	29.77	32.73
Zm00001d042416_P002	Maize	extracellular, plasma membrane	31.09	29.62
Zm00001d008725_P003	Maize	cytosol	33.22	29.15
Zm00001d039673_P002	Maize	cytosol	32.73	28.39
Zm00001d047502_P001	Maize	extracellular	28.12	27.67
Zm00001d047633_P002	Maize	nucleus	32.24	25.52
Zm00001d011155_P012	Maize	nucleus	32.73	25.42
Zm00001d028898_P011	Maize	cytosol	32.07	25.32
Zm00001d033704_P007	Maize	extracellular	30.43	25.07
Zm00001d013453_P001	Maize	nucleus	30.1	24.93
Zm00001d044510_P002	Maize	mitochondrion	32.57	24.69
Zm00001d024533_P001	Maize	nucleus	30.1	17.18
Zm00001d048632_P001	Maize	cytosol	35.69	15.7
Zm00001d007719_P010	Maize	cytosol	34.7	15.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK49201.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K7U9C9
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002211D1D	EnsemblPlantsGene:Zm00001d048924	EnsemblPlants:Zm00001d048924_P001	EnsemblPlants:Zm00001d048924_T001	SEG:seg	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr4:+:8107106..8111257

Molecular Weight (calculated)

64566.0 Da

IEP (calculated)

8.014

GRAVY (calculated)

-0.382

Length

608 amino acids

Sequence
(BLAST)

001: MASSRTSWAD VADAEPAPPP PVAAPAAASN GPARSSYVPP HLRNRPPAAA AAAPASAAPP PRSTAGLLTR TGGGSSFGAG GGGGFGGGRA RGGARWDREP
101: DPFADSAADA EVPFDEHQNT GINFDAYEDI PVEMSGRDIP PPVSTFADID LGDALNENIR RCKYVRPTPV QRHAIPISLA GRDLMACAQT GSGKTAAFCF
201: PIISGIMKAP SAGRPQRGGG MGMRTAYPSA LILSPTRELS MQIHEEARKF SYQTGVRVVV AYGGAPITQQ LRELERGVDI LVATPGRLVD LLERARVSLQ
301: SIRYLALDEA DRMLDMGFEP QVRRIVEQMD MPLPGARQTM LFSATFPKEI QKMASDFLDN YIFLAVGRVG SSTDLIAQRV EFVQEADKRS HLMDLLHAQR
401: DTGKQTLTLV FVETKRGADS LESWLCMNGF PATSIHGDRN QQEREYALRS FKSGQTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: KSGLATAFFN DNNSSLARSL ADLMQESNQE VPAWLLRYAA RPSYGGGGGG RNRRSGGGSR FGGRDFRNDS SSFGKGGSRG GGDYYGGGSS GGYGGGGHGG
601: AGAPSAWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.