Factsheet for Zm00001d011155_P012

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32714	Sorghum	nucleus	90.93	90.01
Zm00001d044510_P002	Maize	mitochondrion	90.29	88.15
Os01t0549400-01	Rice	nucleus	78.29	77.4
TraesCS3D01G202500.3	Wheat	nucleus	75.35	72.93
TraesCS3A01G194200.1	Wheat	nucleus	72.41	72.41
TraesCS3B01G230800.1	Wheat	nucleus	72.29	72.1
Bra001004.1-P	Field mustard	cytosol	50.83	62.58
Bra040699.1-P	Field mustard	cytosol	48.66	62.56
AT3G01540.2	Thale cress	cytosol	49.17	62.2
PGSC0003DMT400080614	Potato	nucleus	48.15	61.5
Solyc12g035130.1.1	Tomato	nucleus	47.77	61.11
Bra023478.1-P	Field mustard	cytosol	51.21	59.32
CDX91943	Canola	cytosol	49.68	58.5
CDX91036	Canola	cytosol	50.83	58.19
CDY28671	Canola	cytosol	48.53	57.32
CDX74304	Canola	cytosol	49.94	56.83
Solyc02g086660.2.1	Tomato	nucleus	50.7	56.23
PGSC0003DMT400001391	Potato	cytosol	51.98	55.75
GSMUA_Achr8P31890_001	Banana	nucleus	55.94	55.73
AT5G14610.1	Thale cress	cytosol	50.45	55.48
Zm00001d039673_P002	Maize	cytosol	49.3	55.06
Zm00001d008725_P003	Maize	cytosol	48.66	54.98
KRH56577	Soybean	nucleus	54.15	54.71
KRG93254	Soybean	endoplasmic reticulum	54.02	54.51
CDX85591	Canola	cytosol	51.21	53.32
VIT_14s0066g01020.t01	Wine grape	cytosol	54.41	49.36
Zm00001d039452_P002	Maize	cytosol	31.16	44.12
Zm00001d042416_P002	Maize	extracellular, plasma membrane	30.78	37.77
Zm00001d019449_P004	Maize	nucleus	22.73	35.04
Zm00001d036897_P001	Maize	extracellular	26.95	34.36
Zm00001d048924_P001	Maize	plasma membrane	25.42	32.73
Zm00001d007755_P001	Maize	plastid	26.95	32.61
Zm00001d007757_P004	Maize	plastid	26.56	31.42
Zm00001d048632_P001	Maize	cytosol	50.57	28.65
Zm00001d007719_P010	Maize	cytosol	48.79	28.23
Zm00001d047502_P001	Maize	extracellular	20.82	26.38
Zm00001d047633_P002	Maize	nucleus	24.39	24.87
Zm00001d033704_P007	Maize	extracellular	23.24	24.66
Zm00001d013453_P001	Maize	nucleus	22.86	24.39
Zm00001d028898_P011	Maize	cytosol	23.63	24.03
Zm00001d024533_P001	Maize	nucleus	23.75	17.46

Protein Annotations

EntrezGene:103636001	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6FXD7	ProteinID:AQK96024.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI000843445D	InterPro:WW_dom
InterPro:WW_dom_sf	EnsemblPlantsGene:Zm00001d011155	EnsemblPlants:Zm00001d011155_P012	EnsemblPlants:Zm00001d011155_T012	SEG:seg	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr8:-:140995180..141000193

Molecular Weight (calculated)

86987.1 Da

IEP (calculated)

10.293

GRAVY (calculated)

-0.881

Length

783 amino acids

Sequence
(BLAST)

001: MSGASGSTGR AAPRYAPDDL TLLKPWRGLV DGTTGYLYYW NPETNVTQYE RPMPPENQLP PPPPPLPPPP PRSRDRRDRS RSRSRTPPRR DRRDRDRDDE
101: HASSKTASSH HHPAPIAVAD YPSTEAYRRR HEITVTGDNV PAPITSFEAG GFPSEILKEF LKIQRAGFAS PTPIQAQSWP IAMQNQDVVA IAKTGSGKTL
201: GYLLPGFMHI KRLQNSTRNG PTVLVLAPTR ELATQILDEA MKFGRSSRIS CTCLYGGAPK GPQLRDLDRG VDVVVATPGR LNDILEMRRV SLKQVSYLVL
301: DEADRMLDMG FEPQIRKIVK EIPHRRQTLM YTATWPKEVR RIADDLLVHP LQVTIGNVDE LVANSAITQH IEVITPSEKQ RRLEQILRSQ VSGSKILIFC
401: TTKRMCDQLA RTLTRQFGAS AIHGDKSQSE REKVLNHFRS GRSPILVATD VAARGLDIKD IRVVINYDFP TGVEDYVHRI GRTGRAGATG VAYTFFCDQD
501: SKYAADLIKI LEGANQQVPR DLEDMASRGG GRGKKRNRWA SRSERGGPRS ELDSRYSGRD GLASSGRSES GRGSHGRDDY GSRGRYDSGE TDGRSRRSAR
601: GRSRSRSPSP KRSHHHEARR SRSRSRSRSC RNFRASRSKS HSPVASSRHE KAAVISGSTQ PNLGYAEHKS PPRSHSGDDH VNHPDQKDDH MGDGKMERVD
701: LDRSPSPQYD KSAPYSPAYN GKASDSMSPN VQPKADAKYV KPSGKPEPAS PLRHSKGRDD DDEGIIDEDG EIAERDLRAS AAV

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.