Factsheet for PGSC0003DMT400080614

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g035130.1.1	Tomato	nucleus	97.39	97.55
PGSC0003DMT400001391	Potato	cytosol	77.65	65.21
AT3G01540.2	Thale cress	cytosol	65.74	65.11
Bra040699.1-P	Field mustard	cytosol	64.11	64.53
Bra001004.1-P	Field mustard	cytosol	66.07	63.68
Bra023478.1-P	Field mustard	cytosol	66.56	60.35
CDX91943	Canola	cytosol	64.93	59.85
CDY28671	Canola	cytosol	64.6	59.73
CDX91036	Canola	cytosol	66.23	59.36
CDX74304	Canola	cytosol	65.25	58.14
AT5G14610.1	Thale cress	cytosol	66.23	57.02
KRG93254	Soybean	endoplasmic reticulum	70.15	55.41
KRH56577	Soybean	nucleus	69.98	55.35
TraesCS3A01G130200.4	Wheat	cytosol	58.56	55.23
TraesCS3B01G149300.8	Wheat	cytosol	58.4	55.08
TraesCS3D01G131100.11	Wheat	cytosol	58.56	54.98
CDX85591	Canola	cytosol	66.23	53.99
Zm00001d008725_P003	Maize	cytosol	61.01	53.97
Zm00001d039673_P002	Maize	cytosol	60.36	52.78
VIT_14s0066g01020.t01	Wine grape	cytosol	74.06	52.61
OQU86230	Sorghum	cytosol	60.52	51.89
HORVU3Hr1G024610.13	Barley	cytosol, plastid	59.22	51.34
GSMUA_Achr8P31890_001	Banana	nucleus	64.11	50.0
Os01t0172200-01	Rice	cytosol	61.34	49.54
Zm00001d011155_P012	Maize	nucleus	61.5	48.15
KXG32714	Sorghum	nucleus	61.66	47.79
Zm00001d044510_P002	Maize	mitochondrion	62.15	47.51
Os01t0549400-01	Rice	nucleus	61.01	47.22
PGSC0003DMT400083878	Potato	cytosol	38.34	46.91
TraesCS3D01G202500.3	Wheat	nucleus	60.03	45.49
TraesCS3A01G194200.1	Wheat	nucleus	57.75	45.21
TraesCS3B01G230800.1	Wheat	nucleus	57.42	44.84
PGSC0003DMT400010921	Potato	cytosol	33.28	33.89
PGSC0003DMT400081851	Potato	cytosol	32.79	33.28
PGSC0003DMT400002828	Potato	cytosol	32.79	32.52
PGSC0003DMT400024026	Potato	nucleus	29.36	32.32
PGSC0003DMT400046821	Potato	cytosol	37.85	32.31
PGSC0003DMT400073340	Potato	cytosol	26.26	27.33
PGSC0003DMT400036663	Potato	cytosol	25.94	26.99
PGSC0003DMT400023277	Potato	cytosol	32.46	25.71
PGSC0003DMT400024330	Potato	cytosol	27.08	24.81
PGSC0003DMT400043101	Potato	nucleus	27.9	24.19
PGSC0003DMT400071932	Potato	cytosol	3.92	21.62
PGSC0003DMT400011665	Potato	nucleus	29.2	16.05

Protein Annotations

EntrezGene:102606394	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M1D3R2	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400031391	PGSC:PGSC0003DMG400031391	EnsemblPlants:PGSC0003DMT400080614	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540
UniParc:UPI0002952540	InterPro:WW_dom	InterPro:WW_dom_sf	RefSeq:XP_015159208.1	SEG:seg	:

Description

ATP-dependent RNA helicase DB10 [Source:PGSC_GENE;Acc:PGSC0003DMG400031391]

Coordinates

chr12:+:20487129..20494516

Molecular Weight (calculated)

66670.8 Da

IEP (calculated)

10.066

GRAVY (calculated)

-0.544

Length

613 amino acids

Sequence
(BLAST)

001: MAAILTASSG PSYAPEDPTL PKPWKGLVDG TTGYIYFWNP ETNDTQYEKP VHSSNGVSAP AQKSAVFVSS SVQKPSQGQH YDPDGRHSRG SNNKVTSLKG
101: DQNVRSSSDH HEGYDSLGVG TDISQESYCR HNEISVMGGD VPAPLTSFEA TGFPSEIVRE MHQAGFSAPT PIQAQSWPVA LQGRDIVAIA KTGSGKTLGY
201: LIPGFIHLKN RRSNPQLGPT ILVLSPTREL ATQIQAEAVK FGKSSRISCT CLYGGAPKGP QLRELSRGVD IVVATPGRLN DILEMRRLSL GQVSYLVLDE
301: ADRMLDMGFE PQIRKIVKEV PTQRQTLMYT ATWPKGVRKI AADLLVNSVQ VNIGNVDELV ANKSITQHIE VLSPMEKQRR LEQILRSNEP GSKIIIFCST
401: KKMCDQLSRN LTRNFGAAAI HGDKSQGERD YVLSQFRTGR SPVLVATDVA ARGLDIKDIR VVVNFDFPTG IEDYVHRIGR TGRAGASGLA YTFFSDQDAK
501: HALDLVKVLE GANQSVPTEL RDMVSRGGGM GKARWGSGQG GRGGRFNGSY VGRNGGRGGG WNNSSSERGG GRGYDRGSRD SDRYLNADAP RKRSRSRSPN
601: KGSGWSDKKS RFT

Best Arabidopsis Sequence Match ( AT5G14610.6 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSGSSGW GRERSRSPER FRGGPPSTSS PPRSFHEAMM MKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.